rfamFamilyAccessionToID: Convert an Rfam family accession to an Rfam family ID

In rfaRm: An R interface to the Rfam database

Description

Gets the Rfam family ID corresponding to the provided Rfam family accession.

Usage

rfamFamilyAccessionToID(rfamFamilyAccession)

Arguments

rfamFamilyAccession

string with the Rfam family accession to be converted to an Rfam family ID.

Value

A string with the Rfam family ID corresponding to the provided Rfam family accesion. The Rfam family ID usually describes the type of RNA associated to the Rfam family.

References

Ioanna Kalvari, Joanna Argasinska, Natalia Quinones-Olvera, Eric P Nawrocki, Elena Rivas, Sean R Eddy, Alex Bateman, Robert D Finn, Anton I Petrov, Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families, Nucleic Acids Research, Volume 46, Issue D1, 4 January 2018, Pages D335–D342, https://doi.org/10.1093/nar/gkx1038

https://docs.rfam.org/en/latest/api.html

Examples

# Get the Rfam family ID corresponding to the Rfam accession RF00050

rfamFamilyAccessionToID("RF00050")

rfaRm documentation built on March 16, 2021, 6:01 p.m.