rnaseqcomp: Benchmarks for RNA-seq Quantification Pipelines

Several quantitative and visualized benchmarks for RNA-seq quantification pipelines. Two-condition quantifications for genes, transcripts, junctions or exons by each pipeline with necessary meta information should be organized into numeric matrices in order to proceed the evaluation.

AuthorMingxiang Teng and Rafael A. Irizarry
Date of publicationNone
MaintainerMingxiang Teng <tengmx@gmail.com>
LicenseGPL-3
Version1.4.0
https://github.com/tengmx/rnaseqcomp

View on Bioconductor

Files

rnaseqcomp/DESCRIPTION
rnaseqcomp/NAMESPACE
rnaseqcomp/R
rnaseqcomp/R/AllClasses.R rnaseqcomp/R/plot2TX.R rnaseqcomp/R/plotFC.R rnaseqcomp/R/plotNE.R rnaseqcomp/R/plotROC.R rnaseqcomp/R/plotSD.R rnaseqcomp/R/signalCalibrate.R rnaseqcomp/R/simdata.R
rnaseqcomp/build
rnaseqcomp/build/vignette.rds
rnaseqcomp/data
rnaseqcomp/data/datalist
rnaseqcomp/data/simdata.RData
rnaseqcomp/inst
rnaseqcomp/inst/CITATION
rnaseqcomp/inst/NEWS
rnaseqcomp/inst/doc
rnaseqcomp/inst/doc/rnaseqcomp.R
rnaseqcomp/inst/doc/rnaseqcomp.Rmd
rnaseqcomp/inst/doc/rnaseqcomp.pdf
rnaseqcomp/man
rnaseqcomp/man/check_rnaseqcomp.Rd rnaseqcomp/man/plot2TX.Rd rnaseqcomp/man/plotFC.Rd rnaseqcomp/man/plotNE.Rd rnaseqcomp/man/plotROC.Rd rnaseqcomp/man/plotSD.Rd rnaseqcomp/man/rnaseqcomp-class.Rd rnaseqcomp/man/signalCalibrate.Rd rnaseqcomp/man/simdata.Rd
rnaseqcomp/vignettes
rnaseqcomp/vignettes/rnaseqcomp.Rmd
rnaseqcomp/vignettes/rnaseqcomp.bib

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