rnaseqcomp: Benchmarks for RNA-seq Quantification Pipelines

Several quantitative and visualized benchmarks for RNA-seq quantification pipelines. Two-condition quantifications for genes, transcripts, junctions or exons by each pipeline with necessary meta information should be organized into numeric matrices in order to proceed the evaluation.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("rnaseqcomp")
AuthorMingxiang Teng and Rafael A. Irizarry
Bioconductor views QualityControl RNASeq Visualization
Date of publicationNone
MaintainerMingxiang Teng <tengmx@gmail.com>
LicenseGPL-3
Version1.4.0
https://github.com/tengmx/rnaseqcomp

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
R
R/AllClasses.R R/plot2TX.R R/plotFC.R R/plotNE.R R/plotROC.R R/plotSD.R R/signalCalibrate.R R/simdata.R
build
build/vignette.rds
data
data/datalist
data/simdata.RData
inst
inst/CITATION
inst/NEWS
inst/doc
inst/doc/rnaseqcomp.R
inst/doc/rnaseqcomp.Rmd
inst/doc/rnaseqcomp.pdf
man
man/check_rnaseqcomp.Rd man/plot2TX.Rd man/plotFC.Rd man/plotNE.Rd man/plotROC.Rd man/plotSD.Rd man/rnaseqcomp-class.Rd man/signalCalibrate.Rd man/simdata.Rd
vignettes
vignettes/rnaseqcomp.Rmd
vignettes/rnaseqcomp.bib

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