simdata: Example of Quantifications on Simulation Data
In rnaseqcomp: Benchmarks for RNA-seq Quantification Pipelines
Description
This dataset include quantifications on 15776 transcripts on
two cell lines each with 8 replicates. The true differential
expressed transcripts were simulated. Quantifications from
two pipelines (RSEM and FluxCapacitor) are included in this
dataset at simdata$quant. Meta information of transcripts
is included at simdata$meta, inlcuding if they belongs
to house keeping genes and their true fold change status.
Sample information is included at simdata$samp.
Format
A list of objects including list of two 15776*16
quantification matrices, one 15776*6 data frame with meta
information and one 16*3 data frame with sample information.
rnaseqcomp documentation built on Nov. 8, 2020, 8:04 p.m.
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Description
This dataset include quantifications on 15776 transcripts on
two cell lines each with 8 replicates. The true differential
expressed transcripts were simulated. Quantifications from
two pipelines (RSEM and FluxCapacitor) are included in this
dataset at simdata$quant. Meta information of transcripts
is included at simdata$meta, inlcuding if they belongs
to house keeping genes and their true fold change status.
Sample information is included at simdata$samp.
Format
A list of objects including list of two 15776*16 quantification matrices, one 15776*6 data frame with meta information and one 16*3 data frame with sample information.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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