Man pages for rtracklayer
R interface to genome annotation files and the UCSC genome browser
| activeView-methods | Accessing the active view |
| asBED | Coerce to BED structure |
| asGFF | Coerce to GFF structure |
| BamFile-methods | Export to BAM Files |
| basicTrackLine-class | Class "BasicTrackLine" |
| Bed15TrackLine-class | Class "Bed15TrackLine" |
| BEDFile-class | BEDFile objects |
| BigBedFile | BigBed Import and Export |
| BigBedSelection | Selection of ranges and columns |
| BigWigFile | BigWig Import and Export |
| BigWigSelection-class | Selection of ranges and columns |
| blocks-methods | Get blocks/exons |
| browseGenome | Browse a genome |
| browserSession-class | Class "BrowserSession" |
| browserSession-methods | Get a genome browser session |
| browserView-class | Class "BrowserView" |
| BrowserViewList-class | Lists of BrowserView |
| browserView-methods | Getting browser views |
| browserViews-methods | Getting the browser views |
| Chain-class | Chain objects |
| cpneTrack | CPNE1 SNP track |
| export | Import and export |
| FastaFile-class | FastaFile objects |
| genomeBrowsers | Get available genome browsers |
| GenomicData | Data on a Genome |
| GenomicSelection | Genomic data selection |
| GFFFile-class | GFFFile objects |
| GRangesForUCSCGenome | GRanges for a Genome |
| IntegerRangesList-methods | Ranges on a Genome |
| laySequence-methods | Load a sequence |
| layTrack-methods | Laying tracks |
| liftOver | Lift intervals between genome builds |
| Quickload-class | Quickload Access |
| QuickloadGenome-class | Quickload Genome Access |
| readGFF | Reads a file in GFF format |
| RTLFile-class | RTLFile objects |
| TabixFile-methods | TabixFile Import/Export |
| targets | microRNA target sites |
| TrackDb-class | Track Databases |
| TrackHub-class | TrackHub Access |
| TrackHubGenome-class | TrackHub Genome Access |
| tracks-methods | Accessing track names |
| TwoBitFile-class | 2bit Files |
| UCSCData-class | Class "UCSCData" |
| UCSCFile-class | UCSCFile objects |
| ucscGenomes | Get available genomes on UCSC |
| UCSCSchema-class | UCSC Schema |
| ucscSession-class | Class "UCSCSession" |
| UCSCTableQuery-class | Querying UCSC Tables |
| ucscTrackLine-class | Class "TrackLine" |
| ucscTrackModes-class | Class "UCSCTrackModes" |
| ucscTrackModes-methods | Accessing UCSC track modes |
| ucscView-class | Class "UCSCView" |
| WIGFile-class | WIG Import and Export |
| wigToBigWig | Convert WIG to BigWig |
| wigTrackLine-class | Class "GraphTrackLine" |
