Man pages for sSeq
Shrinkage estimation of dispersion in Negative Binomial models for RNA-seq experiments with small sample size
| countsTable | An Example Simulation Data |
| drawMA_vol | Draw MA Plot and Volcano Plot |
| ecdfAUC | Draw Empirical Cumulative Density Function (ECDF) plot |
| equalSpace | Calculate Grouped Shrinkage Estimates |
| exactNBtest1 | Perform only one exact test under the Negative Binomial... |
| getAdjustDisp | Calculate Shrinkage (SH) Estimates for Dispersion |
| getNormFactor | Estimate size factors |
| getQ | Estimate the shrinkage target based on the quantiles of... |
| getT | Estimate the shrinkage target based on the initial estimates |
| getTgroup | This is an internal function used to calculate the shrinkage... |
| Hammer2months | An example of real experiment. |
| nbinomTestForMatricesSH | Exact test under Negative Binomial Test with Shrinkage... |
| nbTestSH | Differential Analysis based on RNA-seq experiments using... |
| plotDispersion | Drawing Dispersion-Mean plot. |
| rnbinomMV | Randomly Generate Negative Binomial Variable with parameters... |
| rowVars | Calculating the sample variance within each row of A matrix |
| sim | Generating Simulated Data |
| sSeq-package | Shrinkage estimation of dispersion in Negative Binomial... |
| Sultan | An example of real experiment. |
| Tuch | An example of real experiment. |
