Sultan: An example of real experiment.

In sSeq: Shrinkage estimation of dispersion in Negative Binomial models for RNA-seq experiments with small sample size

Description

A subset of the real experiment Sultan et al. It is used as an example for running some functions in this package.

Usage

data(Sultan)

Format

A data.frame containing 4 columns and 52580 rows.

Details

It compares two biological replicates of human cell lines Ramos B and HEK293T with the Illumina platform.

Source

http://bowtie-bio.sourceforge.net/recount/

References

Sultan, M. et al. (2008). A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. Science, 321, 956.

Frazee, A. et al. (2011). ReCount: A multi-experiment resource of analysis-ready RNA-seq gene count datasets. BMC Bioinformatics, 12, 449.

Examples

data(Sultan);
head(countsTable);

sSeq documentation built on Nov. 8, 2020, 5:52 p.m.