getNormFactor: Estimate size factors

Description Usage Arguments References Examples

Description

Calculate the size factor.

Usage

1
getNormFactor(countsTable1)

Arguments

countsTable1

A data.frame or a matrix of counts in which a row represents for a gene and a column represents for a sample. There must be at least two columns in countsTable.

References

Anders, S. and Huber, W. (2010). Differential expression analysis for sequence count data. Genome Biology, 11, R106.

Examples

1
2
3
#load a simulated data that includes a count table
data("countsTable");
getNormFactor(countsTable);


Search within the sSeq package
Search all R packages, documentation and source code

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.