getNormFactor: Estimate size factors
In sSeq: Shrinkage estimation of dispersion in Negative Binomial models for RNA-seq experiments with small sample size
Description
Usage
Arguments
References
Examples
View source: R/getNormFactor.R
Description
Calculate the size factor.
Usage
1
getNormFactor(countsTable1)
Arguments
countsTable1
A data.frame or a matrix of counts in which a row represents for a gene and
a column represents for a sample. There must be at least two columns in
countsTable.
References
Anders, S. and Huber, W. (2010). Differential expression analysis for sequence count data. Genome Biology, 11, R106.
Examples
1
2
3
#load a simulated data that includes a count table
data("countsTable");
getNormFactor(countsTable);
sSeq documentation built on Nov. 8, 2020, 5:52 p.m.
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Description Usage Arguments References Examples
View source: R/getNormFactor.R
Description
Calculate the size factor.
Usage
1 | getNormFactor(countsTable1)
|
Arguments
countsTable1 |
A data.frame or a matrix of counts in which a row represents for a gene and a column represents for a sample. There must be at least two columns in countsTable. |
References
Anders, S. and Huber, W. (2010). Differential expression analysis for sequence count data. Genome Biology, 11, R106.
Examples
1 2 3 | #load a simulated data that includes a count table
data("countsTable");
getNormFactor(countsTable);
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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