.BBSoptions
          
        
          
            
            NAMESPACE
          
        
          
            
            DESCRIPTION
          
        
          
            
            build/vignette.rds
          
        
          
            
            src/Makevars.win
          
        
          
            
            src/dataHandle.cpp
          
        
          
            
            src/Makevars
          
        
          
            
            R/searchEngine.r
          
        
          
            
            R/rhhtml.r
          
        
          
            
            R/main.r
          
        
          
            
            R/spplot.r
          
        
          
            
            R/rshtml.r
          
        
          
            
            R/basic.r
          
        
          
            
            R/rdhtml.r
          
        
          
            
            R/zzz.R
          
        
          
            
            R/rchtml.r
          
        
          
            
            R/rghtml.r
          
        
          
            
            R/rihtml.r
          
        
          
            
            vignettes/sapFinder.Rnw
          
        
          
            
            vignettes/biomart.png
          
        
          
            
            vignettes/sapFinder.bib
          
        
          
            
            man/runTandem.Rd
          
        
          
            
            man/dbCreator.Rd
          
        
          
            
            man/easyRun.Rd
          
        
          
            
            man/parserGear.Rd
          
        
          
            
            man/reportCreator.Rd
          
        
          
            
            tests/runTests.R
          
        
          
            
            inst/parser4sapFinder.jar
          
        
          
            
            inst/NEWS
          
        
          
            
            inst/CITATION
          
        
          
            
            inst/savdbcreate.v1.2.jar
          
        
          
            
            inst/doc/sapFinder.pdf
          
        
          
            
            inst/doc/sapFinder.Rnw
          
        
          
            
            inst/doc/sapFinder.R
          
        
          
            
            inst/images/minus.gif
          
        
          
            
            inst/images/seq_tool_bg.gif
          
        
          
            
            inst/images/spectral_thumb.gif
          
        
          
            
            inst/images/bg_bar.png
          
        
          
            
            inst/images/plus.gif
          
        
          
            
            inst/images/head_right.png
          
        
          
            
            inst/images/li_bg.gif
          
        
          
            
            inst/images/seq_foot_bg.gif
          
        
          
            
            inst/images/sequence.png
          
        
          
            
            inst/images/spectral_thumb.png
          
        
          
            
            inst/images/seq_ctl_topbg.gif
          
        
          
            
            inst/images/help_images/help4.png
          
        
          
            
            inst/images/help_images/help6.png
          
        
          
            
            inst/images/help_images/help5.png
          
        
          
            
            inst/images/help_images/help7.png
          
        
          
            
            inst/images/help_images/help3.png
          
        
          
            
            inst/images/help_images/help2.png
          
        
          
            
            inst/images/help_images/help1.png
          
        
          
            
            inst/images/help_images/help8.png
          
        
          
            
            inst/js/content.js
          
        
          
            
            inst/js/index.js
          
        
          
            
            inst/js/jquery.qtip.min.js
          
        
          
            
            inst/js/index2.js
          
        
          
            
            inst/js/jquery-1.10.2.min.js
          
        
          
            
            inst/extdata/sapFinder_test_BioMart.Xref.txt
          
        
          
            
            inst/extdata/sapFinder_test_ensGeneMrna.fa
          
        
          
            
            inst/extdata/sapFinder_test_ensGene.txt
          
        
          
            
            inst/extdata/sapFinder_test.mgf
          
        
          
            
            inst/extdata/sapFinder_test.vcf
          
        
          
            
            inst/unitTests/test_TestFiles.R
          
        
          
            
            inst/css/left.css
          
        
          
            
            inst/css/content.css
          
        
          
            
            inst/css/jquery.qtip.min.css
          
        
          
            
            inst/css/index.css
          
        
          
            
            inst/css/jquery.qtip.css