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R/rghtml.r
In sapFinder: A package for variant peptides detection and visualization in shotgun proteomics.
Defines functions
.rghtml
.writeBody_g
.writeHead_g
.writeHtml_g
# .writeHtml_g
#
# write the html;
#
# @author xsh
.writeHtml_g<-function(data,outdir,filename="myLeft")
{
page_dir=paste(outdir,.PAGE.DIR,sep="/");
filename=.concat(page_dir,"/", filename, ".html" );
file=file(filename,"w");
cat( '<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"',
' "http://www.w3.org/TR/html4/loose.dtd">\n', file=file, sep="");
.write(.tag("html",other='xmlns="http://www.w3.org/1999/xhtml"'),file);
.writeHead_g(file);
.writeBody_g(data,file);
.write(.tag("/html"),file);
close(file);
}
# .writeHead_g
#
# write the header partion;
#
# @author xsh
.writeHead_g<-function(file)
{
.write(.tag("head"),file);
meta<-'http-equiv="Content-Type" content="text/html; charset=utf-8"';
.write(.ctag("meta",other=meta),file);
.write(.tag("title"),"Left",.tag("/title"),file);
.write(.tag("script",other=paste('type=\"text/javascript\" src=','"',
.JAVASCRIPT.DIR,"/",.JQUERY.MIN.JS,'"',sep="")),nobreak=TRUE, file);
.write( .tag("/script"), file );
.write(.tag("script",other=paste('type=\"text/javascript\" src=','"',
.JAVASCRIPT.DIR,"/",.INDEX.JS,'"',sep="")),nobreak=TRUE, file);
.write( .tag("/script"), file );
.write(.tag("link",other=paste('rel="stylesheet" type="text/css" href=',
'"',.CSS.DIR,"/",.LEFT.CSS,'"',sep="")),nobreak=TRUE, file);
.write( .tag("/link"), file );
.write(.tag("style",other='type="text/css"'),"html{overflow:auto;}",
.tag("/style"),file);
.write(.tag("/head"),file);
}
# .writeBody_g
#
# write the body partion;
#
# @author xsh
.writeBody_g<-function(data,file)
{
.write(.tag("body"),file);
.write(.tag("div",class="seq_ctl_top"),"Index List",.tag("/div"),file);
.write(.tag("ul",id="seq_ul"),file);
#.write(.tag("li"),.tag("span"),.tag("/span"),file);
for(p in 2:length(data))
{
.write(.tag("li"),
.tag("a",other=paste('href="',names(data[p]),
'.html" target="main"',sep="")),
data[[p]][["TRAN"]],.tag("/a"),.tag("/li"),file);
}
.write(.tag("/ul"),file);
.write(.tag("div",class="top_btn"),file); #----------.top_btn---------->
.write(.tag("/div"),file);
.write(.tag("/body"),file);
}
#############################main###############################
# .rghtml
#
# Creates the html page of SAP identification infomation;
#
# @param data List object from .dataHandle_R
.rghtml<-function(data,outdir)
{
page_dir=paste(outdir,.PAGE.DIR,sep="/");
if(!file.exists(page_dir))
{
dir.create(page_dir);
cssdir=paste(system.file(package="sapFinder"),"css",sep="/");
imdir=paste(system.file(package="sapFinder"),"images",sep="/");
jsdir=paste(system.file(package="sapFinder"),"js",sep="/");
file.copy(c(cssdir,imdir,jsdir),page_dir,recursive = TRUE);
}
.writeHtml_g(data=data,outdir,filename='group_left');
}
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sapFinder documentation built on Nov. 8, 2020, 5:59 p.m.
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Defines functions .rghtml .writeBody_g .writeHead_g .writeHtml_g
# .writeHtml_g
#
# write the html;
#
# @author xsh
.writeHtml_g<-function(data,outdir,filename="myLeft")
{
page_dir=paste(outdir,.PAGE.DIR,sep="/");
filename=.concat(page_dir,"/", filename, ".html" );
file=file(filename,"w");
cat( '<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"',
' "http://www.w3.org/TR/html4/loose.dtd">\n', file=file, sep="");
.write(.tag("html",other='xmlns="http://www.w3.org/1999/xhtml"'),file);
.writeHead_g(file);
.writeBody_g(data,file);
.write(.tag("/html"),file);
close(file);
}
# .writeHead_g
#
# write the header partion;
#
# @author xsh
.writeHead_g<-function(file)
{
.write(.tag("head"),file);
meta<-'http-equiv="Content-Type" content="text/html; charset=utf-8"';
.write(.ctag("meta",other=meta),file);
.write(.tag("title"),"Left",.tag("/title"),file);
.write(.tag("script",other=paste('type=\"text/javascript\" src=','"',
.JAVASCRIPT.DIR,"/",.JQUERY.MIN.JS,'"',sep="")),nobreak=TRUE, file);
.write( .tag("/script"), file );
.write(.tag("script",other=paste('type=\"text/javascript\" src=','"',
.JAVASCRIPT.DIR,"/",.INDEX.JS,'"',sep="")),nobreak=TRUE, file);
.write( .tag("/script"), file );
.write(.tag("link",other=paste('rel="stylesheet" type="text/css" href=',
'"',.CSS.DIR,"/",.LEFT.CSS,'"',sep="")),nobreak=TRUE, file);
.write( .tag("/link"), file );
.write(.tag("style",other='type="text/css"'),"html{overflow:auto;}",
.tag("/style"),file);
.write(.tag("/head"),file);
}
# .writeBody_g
#
# write the body partion;
#
# @author xsh
.writeBody_g<-function(data,file)
{
.write(.tag("body"),file);
.write(.tag("div",class="seq_ctl_top"),"Index List",.tag("/div"),file);
.write(.tag("ul",id="seq_ul"),file);
#.write(.tag("li"),.tag("span"),.tag("/span"),file);
for(p in 2:length(data))
{
.write(.tag("li"),
.tag("a",other=paste('href="',names(data[p]),
'.html" target="main"',sep="")),
data[[p]][["TRAN"]],.tag("/a"),.tag("/li"),file);
}
.write(.tag("/ul"),file);
.write(.tag("div",class="top_btn"),file); #----------.top_btn---------->
.write(.tag("/div"),file);
.write(.tag("/body"),file);
}
#############################main###############################
# .rghtml
#
# Creates the html page of SAP identification infomation;
#
# @param data List object from .dataHandle_R
.rghtml<-function(data,outdir)
{
page_dir=paste(outdir,.PAGE.DIR,sep="/");
if(!file.exists(page_dir))
{
dir.create(page_dir);
cssdir=paste(system.file(package="sapFinder"),"css",sep="/");
imdir=paste(system.file(package="sapFinder"),"images",sep="/");
jsdir=paste(system.file(package="sapFinder"),"js",sep="/");
file.copy(c(cssdir,imdir,jsdir),page_dir,recursive = TRUE);
}
.writeHtml_g(data=data,outdir,filename='group_left');
}
Try the sapFinder package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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