Files in sarks
Suffix Array Kernel Smoothing for discovery of correlative sequence motifs and multi-motif domains
.BBSoptions
NEWS
NAMESPACE
DESCRIPTION
LICENSE
build/vignette.rds
data/simulatedSeqs.rda
data/simulatedScores.rda
java/dcw/sarks/SarksMain.java
java/dcw/sarks/BWT.java
java/dcw/sarks/SarksUtilities.java
java/dcw/sarks/SkewSuffixArray.java
java/dcw/sarks/Sarks.java
R/sarks.R
R/data.R
vignettes/sarks.bib
vignettes/sarks-vignette.Rnw
man/mergedKmerSubPeaks.Rd
man/permutationThresholds.Rd
man/kmerPeaks.Rd
man/regexCounts.Rd
man/clusterKmers.Rd
man/locateKmers.Rd
man/locateClusters.Rd
man/pruneIntervals.Rd
man/simulatedScores.Rd
man/sourceBlock.Rd
man/simulatedSeqs.Rd
man/estimateFalsePositiveRate.Rd
man/sarksFilters.Rd
man/blockInfo.Rd
man/clusterCounts.Rd
man/permutationDistribution.Rd
man/regexLocate.Rd
man/extendKmers.Rd
man/Sarks.Rd
man/kmerCounts.Rd
man/blockScores.Rd
tests/runTests.R
inst/CITATION
inst/doc/sarks-vignette.R
inst/doc/sarks-vignette.pdf
inst/doc/sarks-vignette.Rnw
inst/java/sarks.jar
inst/unitTests/test_sarks.R
