sbgr: R Client for Seven Bridges Genomics API

R client for Seven Bridges Genomics API.

Author
Nan Xiao <road2stat@gmail.com>, Tengfei Yin <tengfei.yin@sbgenomics.com>
Date of publication
None
Maintainer
Nan Xiao <road2stat@gmail.com>
License
MIT + file LICENSE
Version
1.1.1
URLs

View on Bioconductor

Man pages

Auth-class
Class Auth
billing
Returns the list of all billing groups you have access to
billing_groups
[v2] Get a single billing group
billing_invoices
List invoices
file_copy
Copy specified file(s) to the specified project
file_delete
Removes a file from a project
file_details
Returns detailed information about a project's files
file_download_url
Returns a direct download URL for a project's file
file_list
Returns the list of all project files for a project
file_meta_update
Update project's file metadata
Item-class
Class Item
Metadata
Metadata class
MetaSchema-class
Meta schema
misc_get_auth_token
Opens browser to copy the auth token
misc_get_uploader
Download SBG uploader and extract to a specified directory
misc_make_metadata
Specify the parameters of the file metadata and return a...
misc_upload_cli
Upload files using SBG uploader
pipeline_add
Add a pipeline to a specified project
pipeline_details
Returns the details of a pipeline for a project
pipeline_list_my
Returns the list of pipelines in user's "My Pipelines"...
pipeline_list_project
Returns a list of all the pipelines in project
pipeline_list_pub
Returns the list of all public pipelines
project_delete
Delete a project
project_details
Returns the details of the project
project_list
Returns the list of all projects you have access to
project_member_add
Add a user to the project with appropriate permissions
project_member_delete
Removes a member from a project
project_members
Returns a list of all users invited to the project and their...
project_member_update
Set permissions for a user to a project
project_new
Create new project
rate_limit
Rate Limit (V2)
sbgapi
wrapper of http logic for SBG API
sbgr-package
R Client for Seven Bridges Genomics API
status_check
check request status
task_action
Performs action on the task
Task-class
Task class
task_details
Returns information about the task
task_list
Returns the list of all the tasks for a project
task_run
Runs a task as a part of a project
upload_complete_all
Reports the complete file upload
upload_complete_part
Reports the completion of the part upload
upload_delete
Aborts the upload
upload_info
Returns upload information for the ongoing upload
upload_info_part
Returns AWS S3 signed URL for a part of the file upload
upload_init
Initializes the upload of the specified file
user_list
List user resources (V2)

Files in this package

sbgr/DESCRIPTION
sbgr/LICENSE
sbgr/NAMESPACE
sbgr/NEWS
sbgr/R
sbgr/R/0.core.R
sbgr/R/1.upload.R
sbgr/R/2.projects.R
sbgr/R/3.billing.R
sbgr/R/4.files.R
sbgr/R/5.pipelines.R
sbgr/R/6.tasks.R
sbgr/R/7.misc.R
sbgr/R/8.ratelimit.R
sbgr/R/88.Meta-class.R
sbgr/R/9.user.R
sbgr/R/99.easy_api.R
sbgr/R/sbgr-package.R
sbgr/README.md
sbgr/build
sbgr/build/vignette.rds
sbgr/inst
sbgr/inst/doc
sbgr/inst/doc/easy_api.Rmd
sbgr/inst/doc/easy_api.html
sbgr/inst/doc/easy_api_v2.Rmd
sbgr/inst/doc/easy_api_v2.html
sbgr/inst/doc/sbgr.Rmd
sbgr/inst/doc/sbgr.html
sbgr/inst/extdata
sbgr/inst/extdata/sample1.fastq
sbgr/inst/extdata/sample1.fastq.meta
sbgr/inst/extdata/test-easy-api.R
sbgr/man
sbgr/man/Auth-class.Rd
sbgr/man/Item-class.Rd
sbgr/man/MetaSchema-class.Rd
sbgr/man/Metadata.Rd
sbgr/man/Task-class.Rd
sbgr/man/billing.Rd
sbgr/man/billing_groups.Rd
sbgr/man/billing_invoices.Rd
sbgr/man/file_copy.Rd
sbgr/man/file_delete.Rd
sbgr/man/file_details.Rd
sbgr/man/file_download_url.Rd
sbgr/man/file_list.Rd
sbgr/man/file_meta_update.Rd
sbgr/man/misc_get_auth_token.Rd
sbgr/man/misc_get_uploader.Rd
sbgr/man/misc_make_metadata.Rd
sbgr/man/misc_upload_cli.Rd
sbgr/man/pipeline_add.Rd
sbgr/man/pipeline_details.Rd
sbgr/man/pipeline_list_my.Rd
sbgr/man/pipeline_list_project.Rd
sbgr/man/pipeline_list_pub.Rd
sbgr/man/project_delete.Rd
sbgr/man/project_details.Rd
sbgr/man/project_list.Rd
sbgr/man/project_member_add.Rd
sbgr/man/project_member_delete.Rd
sbgr/man/project_member_update.Rd
sbgr/man/project_members.Rd
sbgr/man/project_new.Rd
sbgr/man/rate_limit.Rd
sbgr/man/sbgapi.Rd
sbgr/man/sbgr-package.Rd
sbgr/man/status_check.Rd
sbgr/man/task_action.Rd
sbgr/man/task_details.Rd
sbgr/man/task_list.Rd
sbgr/man/task_run.Rd
sbgr/man/upload_complete_all.Rd
sbgr/man/upload_complete_part.Rd
sbgr/man/upload_delete.Rd
sbgr/man/upload_info.Rd
sbgr/man/upload_info_part.Rd
sbgr/man/upload_init.Rd
sbgr/man/user_list.Rd
sbgr/tests
sbgr/tests/testthat
sbgr/tests/testthat.R
sbgr/tests/testthat/test-easy-Auth.R
sbgr/vignettes
sbgr/vignettes/easy_api.Rmd
sbgr/vignettes/easy_api_v2.Rmd
sbgr/vignettes/fig
sbgr/vignettes/fig/sbg-logo.png
sbgr/vignettes/logo.md
sbgr/vignettes/sbgr.Rmd
sbgr/vignettes/style.css