doubletThresholding: doubletThresholding

In scDblFinder: scDblFinder

Description

Sets the doublet scores threshold; typically called by scDblFinder.

Usage

doubletThresholding(d, dbr = 0.025, dbr.sd = 0.015, local = FALSE)

Arguments

d	A data.frame of properties of real and artificial cells, as produced by 'scDblFinder(returnType="table")'.
dbr	The expected (mean) doublet rate.
dbr.sd	The standard deviation of the doublet rate, representing the uncertainty in the estimate.
local	Logical; whether to use local calibration (experimental feature!)

Value

A scaler indicating the decided threshold.

Examples

sce <- mockDoubletSCE()
d <- scDblFinder(sce, verbose=FALSE, returnType="table")
th <- doubletThresholding(d, dbr=0.05)
th$th

scDblFinder documentation built on Nov. 8, 2020, 5:48 p.m.