mockDoubletSCE: mockDoubletSCE

In scDblFinder: scDblFinder

Description

Creates a mock random single-cell experiment object with doublets

Usage

mockDoubletSCE(
  ncells = c(200, 300),
  ngenes = 200,
  mus = NULL,
  dbl.rate = 0.1,
  only.heterotypic = TRUE
)

Arguments

ncells	A positive integer vector indicating the number of cells per cluster (min 2 clusters)
ngenes	The number of genes to simulate. Ignored if 'mus' is given.
mus	A list of cluster averages.
dbl.rate	The doublet rate
only.heterotypic	Whether to create only heterotypic doublets

Value

A SingleCellExperiment object, with the colData columns 'type' indicating whether the cell is a singlet or doublet, and 'cluster' indicating from which cluster (or cluster combination) it was simulated.

Examples

sce <- mockDoubletSCE()

scDblFinder documentation built on Nov. 8, 2020, 5:48 p.m.