README.md

In scFeatureFilter: A correlation-based method for quality filtering of single-cell RNAseq data

scFeatureFilter

By Angeles Arzalluz-Luque, Guillaume Devailly, Anna Mantsoki & Anagha Joshi.

An R package to set thresholds for feature (gene, transcript, ...) filtering in single cell RNA sequencing analyses.

How to install?

You can install the stable version of scFeatureFilter from Bioconductor (Require R version ≥ 3.5):

## try http:// if https:// URLs are not supported
if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
BiocManager::install("scFeatureFilter")

You can install the development version of scFeatureFilter using devtools (Require R version ≥ 3.5):

devtools::install_github("gdevailly/scFeatureFilter")

Getting started

Load the package:

library(scFeatureFilter)

Then it is probably a good idea to read the package vignette:

vignette("Introduction", package = "scFeatureFilter")

scFeatureFilter documentation built on Nov. 8, 2020, 7:49 p.m.