By Angeles Arzalluz-Luque, Guillaume Devailly, Anna Mantsoki & Anagha Joshi.
An R package to set thresholds for feature (gene, transcript, ...) filtering in single cell RNA sequencing analyses.
You can install the stable version of scFeatureFilter from Bioconductor (Require R version ≥ 3.5):
## try http:// if https:// URLs are not supported if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") BiocManager::install("scFeatureFilter")
You can install the development version of scFeatureFilter using
devtools (Require R version ≥ 3.5):
Load the package:
Then it is probably a good idea to read the package vignette:
vignette("Introduction", package = "scFeatureFilter")
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