API for scTensor
Detection of cell-cell interaction from single-cell RNA-seq dataset by tensor decomposition
| Global functions | |
|---|---|
| .BODY3 | Source code |
| .BODY4 | Source code |
| .BODY8 | Source code |
| .BODY8_2 | Source code |
| .CCIhyperGraphPlot | Source code |
| .CCIhyperGraphPlot_2 | Source code |
| .CPM | Source code |
| .CPMED | Source code |
| .CPT | Source code |
| .DGNENRICHMENT | Source code |
| .DOENRICHMENT | Source code |
| .ENRICHMENT | Source code |
| .FTT | Source code |
| .GOENRICHMENT | Source code |
| .HCLUST | Source code |
| .LIGANDALL_BODY | Source code |
| .LIGAND_BODY | Source code |
| .LIGAND_BODY_2 | Source code |
| .MAINHEADER | Source code |
| .MeSHENRICHMENT | Source code |
| .NCGENRICHMENT | Source code |
| .OUTLIERS | Source code |
| .RECEPTORALL_BODY | Source code |
| .RECEPTOR_BODY | Source code |
| .RECEPTOR_BODY_2 | Source code |
| .ReactomeENRICHMENT | Source code |
| .SinglePlot | Source code |
| .XYZ_ENRICH | Source code |
| .XYZ_ENRICH_2 | Source code |
| .XYZ_HEADER1 | Source code |
| .XYZ_HEADER1_2 | Source code |
| .XYZ_HEADER2 | Source code |
| .XYZ_HEADER2_2 | Source code |
| .XYZ_HEADER3 | Source code |
| .XYZ_HEADER3_2 | Source code |
| .Zscaling | Source code |
| .annotationhub_taxid | Source code |
| .cellCellDecomp | Source code |
| .cellCellDecomp.CabelloAguilar | Source code |
| .cellCellDecomp.Distance | Source code |
| .cellCellDecomp.Distance.LR | Source code |
| .cellCellDecomp.Halpern | Source code |
| .cellCellDecomp.LabelPerm.LR | Source code |
| .cellCellDecomp.Pearson | Source code |
| .cellCellDecomp.Pearson.LR | Source code |
| .cellCellDecomp.PossibleCombination | Source code |
| .cellCellDecomp.Second | Source code |
| .cellCellDecomp.Spearman | Source code |
| .cellCellDecomp.Spearman.LR | Source code |
| .cellCellDecomp.Third | Source code |
| .cellCellDecomp.Third_2 | Source code |
| .cellCellRanks | Source code |
| .cellCellReconst | Source code |
| .cellCellReport | Source code |
| .cellCellReport.Third | Source code |
| .cellCellReport.Third_2 | Source code |
| .cellCellSetting | Source code |
| .cellType | Source code |
| .celltypemergedtensor | Source code |
| .celltypemergedtensor.ca | Source code |
| .celltypemergedtensor.ca_2 | Source code |
| .celltypemergedtensor.hl | Source code |
| .celltypemergedtensor.hl_2 | Source code |
| .celltypemergedtensor_2 | Source code |
| .check_NULL_DGN | Source code |
| .check_NULL_DGN_2 | Source code |
| .check_NULL_DO | Source code |
| .check_NULL_DO_2 | Source code |
| .check_NULL_GO_BP | Source code |
| .check_NULL_GO_BP_2 | Source code |
| .check_NULL_GO_CC | Source code |
| .check_NULL_GO_CC_2 | Source code |
| .check_NULL_GO_MF | Source code |
| .check_NULL_GO_MF_2 | Source code |
| .check_NULL_MeSH_A | Source code |
| .check_NULL_MeSH_A_2 | Source code |
| .check_NULL_MeSH_B | Source code |
| .check_NULL_MeSH_B_2 | Source code |
| .check_NULL_MeSH_C | Source code |
| .check_NULL_MeSH_C_2 | Source code |
| .check_NULL_MeSH_D | Source code |
| .check_NULL_MeSH_D_2 | Source code |
| .check_NULL_MeSH_E | Source code |
| .check_NULL_MeSH_E_2 | Source code |
| .check_NULL_MeSH_F | Source code |
| .check_NULL_MeSH_F_2 | Source code |
| .check_NULL_MeSH_G | Source code |
| .check_NULL_MeSH_G_2 | Source code |
| .check_NULL_MeSH_H | Source code |
| .check_NULL_MeSH_H_2 | Source code |
| .check_NULL_MeSH_I | Source code |
| .check_NULL_MeSH_I_2 | Source code |
| .check_NULL_MeSH_J | Source code |
| .check_NULL_MeSH_J_2 | Source code |
| .check_NULL_MeSH_K | Source code |
| .check_NULL_MeSH_K_2 | Source code |
| .check_NULL_MeSH_L | Source code |
| .check_NULL_MeSH_L_2 | Source code |
| .check_NULL_MeSH_M | Source code |
| .check_NULL_MeSH_M_2 | Source code |
| .check_NULL_MeSH_N | Source code |
| .check_NULL_MeSH_N_2 | Source code |
| .check_NULL_MeSH_V | Source code |
| .check_NULL_MeSH_V_2 | Source code |
| .check_NULL_MeSH_Z | Source code |
| .check_NULL_MeSH_Z_2 | Source code |
| .check_NULL_NCG | Source code |
| .check_NULL_NCG_2 | Source code |
| .check_NULL_Reactome | Source code |
| .check_NULL_Reactome_2 | Source code |
| .core2table | Source code |
| .core2table_2 | Source code |
| .divLR | Source code |
| .eachRender | Source code |
| .eachRender_2 | Source code |
| .eachVecLR | Source code |
| .extractLR | Source code |
| .fastPossibleCombination | Source code |
| .frontal.normalization | Source code |
| .geneHyperGraphPlot | Source code |
| .geneHyperGraphPlot_2 | Source code |
| .geneInformation | Source code |
| .geneInformation_taxid | Source code |
| .genePlot | Source code |
| .ggdefault_cols | Source code |
| .hyperLinks | Source code |
| .importAssays | Source code |
| .labelpermutation | Source code |
| .labelpermutation.ca | Source code |
| .labelpermutation.hl | Source code |
| .ligandPatternPlot | Source code |
| .matDrop | Source code |
| .matFC | Source code |
| .matRnbinom | Source code |
| .meanC | Source code |
| .myvisNetwork | Source code |
| .oma4 | Source code |
| .omasize | Source code |
| .receptorPatternPlot | Source code |
| .setColor | Source code |
| .setDEG | Source code |
| .shrink | Source code |
| .shrink2 | Source code |
| .shrinkLR | Source code |
| .shrinkNonLR | Source code |
| .simulateDropoutCounts | Source code |
| .slowPossibleCombination | Source code |
| .smallTwoDplot | Source code |
| .tagCloud | Source code |
| .tagCloud_2 | Source code |
| .uniqueLR | Source code |
| CCSParams-class | Man page |
| GermMale | Man page |
| cellCellDecomp | Man page |
| cellCellDecomp,SingleCellExperiment-method | Man page |
| cellCellRanks | Man page |
| cellCellRanks,SingleCellExperiment-method | Man page |
| cellCellReport | Man page |
| cellCellReport,SingleCellExperiment-method | Man page |
| cellCellSetting | Man page |
| cellCellSetting,SingleCellExperiment-method | Man page |
| cellCellSimulate | Man page Source code |
| cellCellSimulate,SingleCellExperiment-method | Man page |
| convertToNCBIGeneID | Man page Source code |
| getParam | Man page |
| getParam,CCSParams-method | Man page |
| labelGermMale | Man page |
| m | Man page |
| newCCSParams | Man page Source code |
| scTensor | Man page |
| scTensor-package | Man page |
| setParam | Man page |
| setParam,CCSParams,ANY-method | Man page |
| setParam,CCSParams-method | Man page |
| setParam<- | Man page |
| setParam<-,CCSParams,ANY-method | Man page |
| setParam<-,CCSParams-method | Man page |
| tsneGermMale | Man page |
| v | Man page |
