convertToNCBIGeneID: ID conversion function to create the input matrix for...

In scTensor: Detection of cell-cell interaction from single-cell RNA-seq dataset by tensor decomposition

Description

Duplicated row names or NA row names are removed from input matrix, and the matrix with the row names of NCBI Gene ID is generated.

Usage

convertToNCBIGeneID(input, rowID, LefttoRight)

Arguments

input	Input matrix (or data.frame).
rowID	Gene identifier in each row of the input matrix. The length of rowID must be same as the number of tht input matrix.
LefttoRight	Corresponding table with left column (Gene identifier <same type of row ID>) and right column (NCBI Gene ID).

Value

A matrix object with with the row names of NCBI Gene ID.

Author(s)

Koki Tsuyuzaki

Examples

input <- matrix(1:20, nrow=4, ncol=5)
rowID <- c("A", NA, "B", "B")
LefttoRight <- rbind(
  c("A", "1"),
  c("B", "2"),
  c("B", "4"),
  c("D", NA)
)
(input <- convertToNCBIGeneID(input, rowID, LefttoRight))

scTensor documentation built on Nov. 8, 2020, 5 p.m.