cellCellSimulate: Parameter Simulate for scTensor
In scTensor: Detection of cell-cell interaction from single-cell RNA-seq dataset by tensor decomposition
Description
Usage
Arguments
Value
Author(s)
Examples
Description
All parameters is saved to metadata slot of SingleCellExperiment object.
Usage
1
cellCellSimulate(params = newCCSParams(), verbose = TRUE)
Arguments
params
A parameter object generated by newCCSParams().
verbose
Whether the message is outputted or not (Default: TRUE).
Value
A list object containing simcount, LR, and celltype.
simcount is the synthetic count matrix, LR is the synthetic ligand-receptor pair list, and celltype is the vector to specity the celltype of the each column of simcount.
Author(s)
Koki Tsuyuzaki
Examples
1
showMethods("cellCellSimulate")
scTensor documentation built on Nov. 8, 2020, 5 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
All parameters is saved to metadata slot of SingleCellExperiment object.
Usage
1 | cellCellSimulate(params = newCCSParams(), verbose = TRUE)
|
Arguments
params |
A parameter object generated by newCCSParams(). |
verbose |
Whether the message is outputted or not (Default: TRUE). |
Value
A list object containing simcount, LR, and celltype. simcount is the synthetic count matrix, LR is the synthetic ligand-receptor pair list, and celltype is the vector to specity the celltype of the each column of simcount.
Author(s)
Koki Tsuyuzaki
Examples
1 | showMethods("cellCellSimulate")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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