sampleAnnotation: Single cell sample annotation
In scp: Mass Spectrometry-Based Single-Cell Proteomics Data Analysis

Description Usage Format Details See Also

A data frame with 48 observations on the following 6 variables.

Set: a character vector
Channel: a character vector
SampleType: a character vector
lcbatch: a character vector
sortday: a character vector
digest: a character vector

1	data("sampleAnnotation")

An object of class data.frame with 64 rows and 6 columns.

##' The dataset is a subset of the SCoPE2 dataset (version 2, Specht et al. 2019, BioRXiv). The input files batch.csv and annotation.csv were downloaded from a Google Drive repository. The two files were loaded and the columns names were adapted for consistency with mqScpData table (see ?mqScpData). The two tables were filtered to contain only sets present in “mqScpData. The tables were then merged based on the run ID, hence merging the sample annotation and the batch annotation. Finally, annotation for the blank run was added manually. The data is stored as a data.frame'.

readSCP() to see how this file is used.

scp documentation built on Nov. 8, 2020, 8:20 p.m.