Files in scuttle

Single-Cell RNA-Seq Analysis Utilities

tests/testthat.R tests/testthat/test-sum-across-cells.R tests/testthat/test-size-factors.R tests/testthat/setup.R tests/testthat/test-qc-calc.R tests/testthat/test-utils.R tests/testthat/test-downsample.R tests/testthat/test-load-data.R tests/testthat/test-qc-quick.R tests/testthat/test-feat-proc.R tests/testthat/test-which-nonzero.R tests/testthat/test-make-df.R tests/testthat/test-norm.R tests/testthat/test-calc-cpm.R tests/testthat/test-calc-ave.R tests/testthat/test-linear-model.R tests/testthat/test-qc-outlier.R tests/testthat/test-sum-across-feat.R R/scuttle-pkg.R R/utils_other.R R/geometricSizeFactors.R R/RcppExports.R R/sumCountsAcrossFeatures.R R/numDetectedAcrossFeatures.R R/calculateTPM.R R/utils_subset.R R/logNormCounts.R R/perCellQCMetrics.R R/summarizeAssayByGroup.R R/aggregateAcrossCells.R R/uniquifyFeatureNames.R R/calculateFPKM.R R/makePerFeatureDF.R R/makePerCellDF.R R/medianSizeFactors.R R/isOutlier.R R/normalizeCounts.R R/calculateAverage.R R/downsampleMatrix.R R/addPerCellQC.R R/downsampleBatches.R R/quickPerCellQC.R R/sumCountsAcrossCells.R R/numDetectedAcrossCells.R R/mockSCE.R R/librarySizeFactors.R R/utils_parallel.R R/calculateCPM.R R/perFeatureQCMetrics.R R/whichNonZero.R R/aggregateAcrossFeatures.R R/readSparseCounts.R R/fitLinearModel.R man/calculateTPM.Rd man/whichNonZero.Rd man/scuttle-pkg.Rd man/perCellQCMetrics.Rd man/sumCountsAcrossCells.Rd man/quickPerCellQC.Rd man/makePerFeatureDF.Rd man/logNormCounts.Rd man/fitLinearModel.Rd man/makePerCellDF.Rd man/calculateFPKM.Rd man/calculateAverage.Rd man/numDetectedAcrossCells.Rd man/downsampleMatrix.Rd man/perFeatureQCMetrics.Rd man/scuttle-utils.Rd man/calculateCPM.Rd man/uniquifyFeatureNames.Rd man/sumCountsAcrossFeatures.Rd man/aggregateAcrossCells.Rd man/librarySizeFactors.Rd man/summarizeAssayByGroup.Rd man/downsampleBatches.Rd man/readSparseCounts.Rd man/aggregateAcrossFeatures.Rd man/geometricSizeFactors.Rd man/medianSizeFactors.Rd man/addPerCellQC.Rd man/mockSCE.Rd man/isOutlier.Rd man/numDetectedAcrossFeatures.Rd man/normalizeCounts.Rd inst/doc/overview.Rmd inst/doc/overview.R vignettes/overview.Rmd