mockSCE: Mock up a SingleCellExperiment
In scuttle: Single-Cell RNA-Seq Analysis Utilities
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
Mock up a SingleCellExperiment containing simulated data,
for use in documentation examples.
Usage
1
mockSCE(ncells = 200, ngenes = 2000, nspikes = 100)
Arguments
ncells
Integer scalar, number of cells to simulate.
ngenes
Integer scalar, number of genes to simulate.
nspikes
Integer scalar, number of spike-in transcripts to simulate.
Details
Users should set a seed to obtain reproducible results from this function.
Value
A SingleCellExperiment object containing a count matrix in the "counts" assay,
a set of simulated colData fields,
and spike-in data in the "Spikes" field of altExps.
Author(s)
Aaron Lun
See Also
SingleCellExperiment, for the constructor.
Examples
1
2
3
scuttle documentation built on Dec. 19, 2020, 2 a.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
Mock up a SingleCellExperiment containing simulated data, for use in documentation examples.
Usage
1 | mockSCE(ncells = 200, ngenes = 2000, nspikes = 100)
|
Arguments
ncells |
Integer scalar, number of cells to simulate. |
ngenes |
Integer scalar, number of genes to simulate. |
nspikes |
Integer scalar, number of spike-in transcripts to simulate. |
Details
Users should set a seed to obtain reproducible results from this function.
Value
A SingleCellExperiment object containing a count matrix in the "counts" assay,
a set of simulated colData fields,
and spike-in data in the "Spikes" field of altExps.
Author(s)
Aaron Lun
See Also
SingleCellExperiment, for the constructor.
Examples
1 2 3 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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