cv_PMSignature: Output the maximum potential scale reduction statistic of all...

In selectKSigs: Selecting the number of mutational signatures using a perplexity-based measure and cross-validation

Description

Output the maximum potential scale reduction statistic of all parameters estimated

Usage

cv_PMSignature(inputG, Kfold = 3, nRep = 3, Klimit = 8)

Arguments

inputG	a MutationFeatureData S4 class.
Kfold	an integer number of the number of cross-validation folds.
nRep	an integer number of replications.
Klimit	an integer of the maximum value of number of signatures.

Value

a matrix of measures

Examples

load(system.file("extdata/sample.rdata", package = "selectKSigs"))
results <- cv_PMSignature(G, Kfold = 3)

selectKSigs documentation built on Nov. 8, 2020, 5:38 p.m.