getLogLikelihoodC: Calculate the value of the log-likelihood for given...

In selectKSigs: Selecting the number of mutational signatures using a perplexity-based measure and cross-validation

Description

Calculate the value of the log-likelihood for given parameters

Usage

getLogLikelihoodC(vPatternList, vSparseCount, vF, vQ, fdim, signatureNum,
  sampleNum, patternNum, samplePatternNum, isBackground, vF0)

Arguments

vPatternList	The list of possible mutation features (converted to a vector)
vSparseCount	The table showing (mutation feature, sample, the number of mutation) (converted to a vector)
vF	F (converted to a vector)
vQ	Q (converted to a vector)
fdim	a vector specifying the number of possible values for each mutation signature
signatureNum	the number of mutation signatures
sampleNum	the number of cancer genomes
patternNum	the number of possible combinations of all the mutation features
samplePatternNum	the number of possible combination of samples and mutation patternns
isBackground	the logical value showing whether a background mutaiton features is included or not
vF0	a background mutaiton features

Value

a value

selectKSigs documentation built on Nov. 8, 2020, 5:38 p.m.