Man pages for seqCNA
Copy number analysis of high-throughput sequencing cancer data
| applyFilters | The function applies a set of filters to the raw profile. |
| applyThresholds | Apply thresholds on the segmented profile in order to call... |
| plotCNProfile | Plots the profile of a 'SeqCNAInfo-class' object. |
| readSeqsumm | Function that reads seqsumm summarized files. |
| runGLAD | Wrapper function that runs the GLAD segmentation algorithm on... |
| runSeqnorm | This function calls seqnorm, which normalizes the tumoural... |
| runSeqsumm | Function that generates seqsumm summarized files. |
| SeqCNAInfo-class | Class '"SeqCNAInfo"' |
| seqCNA-package | Copy number analysis of deep sequencing cancer data |
| seqsumm_HCC1143 | Example of a seqsumm output, namely for a sequenced sample of... |
| writeCNProfile | Outputs the processed profile of a 'SeqCNAInfo-class' object... |
