Files in seqTools
Analysis of nucleotide, sequence and quality content on fastq files

DESCRIPTION
NAMESPACE
NEWS
R
R/allClasses.R R/allGenerics.R R/allStatics.R R/fastaFunctions.R R/kMer.R R/seqTools.R R/simFunctions.R R/trimFastq.R
build
build/vignette.rds
inst
inst/doc
inst/doc/seqTools.R
inst/doc/seqTools.Rnw
inst/doc/seqTools.pdf inst/doc/seqTools_qual_report.R
inst/doc/seqTools_qual_report.Rnw
inst/doc/seqTools_qual_report.pdf
inst/extdata
inst/extdata/g4_l101_n100.fq.gz
inst/extdata/g5_l101_n100.fq.gz
inst/extdata/sfq1_cont.fq.gz
inst/extdata/sfq1_ctrl.fq.gz
inst/extdata/sfq2_cont.fq.gz
inst/extdata/sfq2_ctrl.fq.gz
inst/extdata/sim.fq.gz
inst/extdata/small.fa
inst/extdata/small.fa.gz
inst/extdata/test_buftest.fq
inst/extdata/test_l10_20_40.fq
inst/extdata/test_l10_ATCGN.fq
inst/extdata/test_l10_atcg.fq
inst/extdata/test_l4.fq
inst/extdata/test_l5_N.fq
inst/extdata/test_l6.fq
inst/extdata/test_l6_LF_end.fq
inst/extdata/test_l6_corrupt.fq
inst/extdata/test_l6_multi_line.fq
inst/extdata/test_res.RData
man
man/Fastqq-class.Rd man/ascii2char.Rd man/cbDistMatrix.Rd man/collectDur.Rd man/countDnaKmers.Rd man/countFastaKmers.Rd man/countGenomeKmers.Rd man/countSpliceKmers.Rd man/fastqKmerLocs.Rd man/fastqKmerSubsetLocs.Rd man/fastqq.Rd man/gcContentMatrix.Rd man/kMerIndex.Rd man/meltDownK.Rd man/mergeFastqq.Rd man/mergedPhred.Rd man/phredDist.Rd man/phredTable.Rd man/plotGCcontent.Rd man/plotKmerCount.Rd man/plotNucCount.Rd man/plotNucFreq.Rd man/plotPhredQuant.Rd man/propPhred.Rd man/revCountDnaKmers.Rd man/seqTools-package.Rd man/simFastqqRunTimes.Rd man/sim_fq.Rd man/trimFastq.Rd man/writeFai.Rd man/writeSimContFastq.Rd man/writeSimFastq.Rd
src
src/Makevars
src/Makevars.win
src/dna_astream.h
src/dna_fasta_stream.h
src/dna_fstream.h
src/fa_traverse.h
src/fastq_parser.h
src/fq_traverse.h
src/resize_matrix.h
src/seqTools.c
src/seqTools.h
src/seq_art.h
src/stat_defs.h
tests
tests/test-all.R tests/test_seqTools.r
vignettes
vignettes/seqTools.Rnw
vignettes/seqTools.bib
vignettes/seqTools_qual_report.Rnw
seqTools documentation built on May 31, 2017, 11:26 a.m.