collectDur: collectDur: Returning elapsed time (in seconds) for...
In seqTools: Analysis of nucleotide, sequence and quality content on fastq files

Description Usage Arguments Value Author(s) See Also Examples

Objects of class Fastqq are created by reading data from FASTQ-files using the function fastqq. The fastqq function calls Sys.time() before and after execution of the core collecting routine. collectDur returns the number of seconds between these two times (as numeric value). collectTime returns the two timestamps inside a list.

1 2	collectDur(object) collectTime(object)

object

Fastqq. Object from which collection duration (or times) is returned.

collectTime returns numeric. collectTime returns list.

Wolfgang Kaisers

fastqq

basedir <- system.file("extdata", package="seqTools")
setwd(basedir)
fq<-fastqq(c("g4_l101_n100.fq.gz", "g5_l101_n100.fq.gz"), k=4,
            probeLabel=c("g4", "g5"))

collectTime(fq)
collectDur(fq)