Man pages for sigPathway
Pathway Analysis
| calcTNullFast | Compute Null T Distribution for Each Gene |
| calcTStatFast | Compute T-Statistics and Corresponding P-Values |
| calculate.GSEA | Calculate 2-sided statistics based on the GSEA algorithm |
| calculate.NGSk | Calculate NGSk (NTk-like) statistics with gene label... |
| calculatePathwayStatistics | Calculate the NTk and NEk statistics |
| estimateNumPerm | Compute the Number of Unique Permutations for a Phenotype... |
| getPathwayStatistics | Give the statistics for the probe sets in a pathway |
| getPathwayStatistics.NGSk | Give the statistics for the probe sets in a pathway |
| importGeneSets | Import gene sets stored in GMT, GMX, GRP, and XML file... |
| MuscleExample | Subset of Inflammatory Myopathy Dataset to Demonstrate... |
| rankPathways | Summarizes Top Pathways from Pathway Analyses |
| rankPathways.NGSk | Summarizes Top Pathways from One of the Pathway Analyses |
| runSigPathway | Perform pathway analysis |
| selectGeneSets | Select gene sets to be analyzed in pathway analysis |
| writeSigPathway | Write results of pathway analysis to HTML format |
