Files in sigPathway
Pathway Analysis

CHANGELOG
DESCRIPTION
NAMESPACE
R
R/calcGeneSetStat.R R/calcProbeStat.R R/checkInputs.R R/estimateNumPerm.R R/getPathwayStat.R R/importGeneSets.R R/rankPathways.R R/runSigPathway.R R/selectGeneSets.R R/writeHTML.R
build
build/vignette.rds
data
data/MuscleExample.RData
inst
inst/doc
inst/doc/sigPathway-vignette.R
inst/doc/sigPathway-vignette.Rnw
inst/doc/sigPathway-vignette.pdf
man
man/MuscleExample.Rd man/calcTNullFast.Rd man/calcTStatFast.Rd man/calculate.GSEA.Rd man/calculate.NGSk.Rd man/calculatePathwayStatistics.Rd man/estimateNumPerm.Rd man/getPathwayStatistics.NGSk.Rd man/getPathwayStatistics.Rd man/importGeneSets.Rd man/rankPathways.NGSk.Rd man/rankPathways.Rd man/runSigPathway.Rd man/selectGeneSets.Rd man/writeSigPathway.Rd
src
src/Makevars
src/calc_gene_set_internal.c
src/calc_gene_set_stat.c
src/calc_probe_stat.c
src/calc_weights.c
src/matrix_fn.c
src/permute.c
src/shuffle.c
src/sigPathway.c
src/sigPathway.h
vignettes
vignettes/MHC1.png
vignettes/TopPathwaysTable.png
vignettes/sigPathway-vignette.Rnw
vignettes/sigPathway-vignette.bib
sigPathway documentation built on May 31, 2017, 11:35 a.m.