get_treat_info: Get Treatment Information
In signatureSearch: Environment for Gene Expression Searching Combined with Functional Enrichment Analysis
Description
Usage
Arguments
Value
Examples
View source: R/refdb_treat_info.R
Description
Get treatment information including perturbation name, cell type and
perturbation type from the reference database
Usage
1
Arguments
refdb
character(1), one of "lincs", "lincs_expr", "cmap" or "cmap_expr"
when using the pre-generated CMAP/LINCS databases or path to the HDF5 file
generated with the build_custom_db function. The details is
shown in the 'refdb' argument of the qSig function
Value
tibble object with 'pert', 'cell', 'pert_type' columns
Examples
1
2
refdb <- system.file("extdata", "sample_db.h5", package="signatureSearch")
treat_info <- get_treat_info(refdb)
signatureSearch documentation built on April 16, 2021, 6 p.m.
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Description Usage Arguments Value Examples
View source: R/refdb_treat_info.R
Description
Get treatment information including perturbation name, cell type and perturbation type from the reference database
Usage
1 |
Arguments
refdb |
character(1), one of "lincs", "lincs_expr", "cmap" or "cmap_expr"
when using the pre-generated CMAP/LINCS databases or path to the HDF5 file
generated with the |
Value
tibble object with 'pert', 'cell', 'pert_type' columns
Examples
1 2 | refdb <- system.file("extdata", "sample_db.h5", package="signatureSearch")
treat_info <- get_treat_info(refdb)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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