Files in signatureSearch

Environment for Gene Expression Searching Combined with Functional Enrichment Analysis

NEWS.md README.md

NAMESPACE

DESCRIPTION

R/RcppExports.R

R/sysdata.rda

R/gess_cmap.R R/dsea_hyperG.R R/feaResult-methods.R R/AllGenerics.R R/runWF.R R/utilities.R R/gsea_internal2.R R/ora_internal.R R/AllClasses.R R/build_custom_db.R R/gessResult-methods.R R/refdb_treat_info.R R/get_functional_catgory_data.R R/oraAnalyzer.R R/dtnetplot.R R/accessor.R R/moa_conn.R R/mabsAnalyser.R R/gess_fisher.R R/tsea_mGSEA.R R/gsea_internal.R R/import_internal_fcts.R R/tsea_dup_hyperG.R R/gess_cor.R R/comp_fea_res.R R/gess_lincs.R R/mabs_internal.R R/io.R R/fgsea2.R R/qSig-methods.R R/gseAnalyzer2.R R/gess_gcmap.R R/gess_res_summary.R R/get_targets.R R/signatureSearch-package.r R/dsea_GSEA.R R/tsea_mabs.R

src/RcppExports.cpp

src/fgsea_init.c

src/fastGSEA.cpp

src/fastGSEA.h

inst/CITATION

inst/doc/signatureSearch.html

inst/doc/signatureSearch.Rmd inst/doc/signatureSearch.R inst/extdata/GESS_FEA_report.Rmd

inst/extdata/test_sample_n2x12328.gctx

inst/extdata/sample_db.h5

inst/extdata/slurm.tmpl

inst/extdata/.batchtools.conf.R

inst/extdata/test_gene_sets_n4.gmt

build/vignette.rds

tests/testthat.R vignettes/signatureSearch.Rmd

vignettes/bibtex.bib

vignettes/images/ss_fc.png

vignettes/images/ss_wf.png

vignettes/images/lincs_cell_ntest.png

vignettes/images/vorinostat_SKB_lincs_gess_res_vis.png

data/targetList.rda

data/lincs_expr_inst_info.rda

data/chembl_moa_list.rda

data/clue_moa_list.rda

data/drugs10.rda

data/lincs_sig_info.rda

data/cell_info.rda

man/GCT-object.Rd man/gmt2h5.Rd man/drugs-methods.Rd man/head-methods.Rd man/get_targets.Rd man/mabsReactome.Rd man/result-methods.Rd man/dsea_GSEA.Rd man/gess_cor.Rd man/dsea_hyperG.Rd man/dtnetplot.Rd man/dim-methods.Rd man/calcGseaStatBatchCpp.Rd man/gseKEGG2.Rd man/chembl_moa_list.Rd man/tsea_mGSEA.Rd man/enrichGO2.Rd man/append2H5.Rd man/enrichReactome.Rd man/tsea_dup_hyperG.Rd man/gess_gcmap.Rd man/lincs_sig_info.Rd man/drugs10.Rd man/feaResult-class.Rd man/signatureSearch-package.Rd man/feaResult.Rd man/moa_conn.Rd man/vec_char_redu.Rd man/set_readable.Rd man/gess_cmap.Rd man/sim_score_grp.Rd man/get_treat_info.Rd man/gessResult-class.Rd man/cellNtestPlot.Rd man/gess_res_vis.Rd man/getSig.Rd man/enrichKEGG2.Rd man/create_empty_h5.Rd man/gess_fisher.Rd man/mabsKEGG.Rd man/getALLEG.Rd man/read_gmt.Rd man/parse_gctx.Rd man/gseGO2.Rd man/gessResult.Rd man/build_custom_db.Rd man/gseReactome.Rd man/targetList.Rd man/getDb.Rd man/comp_fea_res.Rd man/runWF.Rd man/drug_cell_ranks.Rd man/rand_query_ES.Rd man/gctx2h5.Rd man/tsea_mabs.Rd man/cell_info.Rd man/lincs_expr_inst_info.Rd man/tarReduce.Rd man/clue_moa_list.Rd man/qSig-class.Rd man/gess_lincs.Rd man/show-methods.Rd man/mabsGO.Rd man/qSig.Rd man/tail-methods.Rd man/enrichMOA.Rd man/matrix2h5.Rd

signatureSearch documentation built on April 16, 2021, 6 p.m.