feaResult: Constructor for 'feaResult-class'

In signatureSearch: Environment for Gene Expression Searching Combined with Functional Enrichment Analysis

Description

This is a helper function to construct a feaResult object. For detail description, please consult the help file of the feaResult-class.

Usage

feaResult(
  result,
  organism = "UNKNOWN",
  ontology = "UNKNOWN",
  drugs = "UNKNOWN",
  targets = "UNKNOWN"
)

Arguments

result	tibble object containing the FEA results
organism	character(1), organism information of the annotation system
ontology	character(1), ontology type of the GO annotation system. If the annotation system is KEGG, it will be 'KEGG'
drugs	character vector, input drug names used for the enrichment test
targets	character vector, gene labels of the gene/protein targets for the drugs

Value

feaResult object

Examples

fr <- feaResult(result=dplyr::tibble(id=letters[seq_len(10)], 
                                     val=seq_len(10)),
                organism="human", ontology="MF", drugs=c("d1", "d2"), 
                targets=c("t1","t2"))

signatureSearch documentation built on April 16, 2021, 6 p.m.