slinky: Putting the fun in LINCS L1000 data analysis

Wrappers to query the L1000 metadata available via the REST API as well as helpers for dealing with LINCS gctx files, extracting data sets of interest, converting to SummarizedExperiment objects, and some facilities for performing streamlined differential expression analysis of these data sets.

Package details

AuthorEric J. Kort
Bioconductor views DataImport DifferentialExpression GeneExpression GeneSetEnrichment PatternLogic ThirdPartyClient
MaintainerEric J. Kort <>
LicenseMIT + file LICENSE
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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slinky documentation built on Nov. 8, 2020, 10:58 p.m.