convert.snpMatrix: Convert 'snpMatrix' objects to 'snpStats' objects

In snpStats: SnpMatrix and XSnpMatrix classes and methods

Description

These functions convert snpMatrix objects to snpStats objects. convert.snpMatrix converts a single object, while convert.snpMatrix.dir converts all stored elements in a specified directory. They really only change the class names since most of the classes in snpStats are backwards-compatible with snpMatrix. The exception is the ImputationRules class; imputation.rules objects will need to be regenerated.

Usage

convert.snpMatrix(object)

convert.snpMatrix.dir(dir = ".", ext = "RData")

Arguments

object	Object to be converted
dir	A directory containing saved snpMatrix objects
ext	The file extension for files containing such objects

Value

convert.snpMatrix returns the converted object. convert.snpMatrix.dir rewrites the files in place.

Author(s)

David Clayton [e-mail]

snpStats documentation built on Nov. 8, 2020, 10:59 p.m.