Description Usage Arguments Details Value Author(s) See Also Examples
The IMPUTE2 program generates, for each SNP and each subject,
posterior probabilities for the three genotypes. This function reads
such data as a SnpMatrix
object, storing the posterior
probabilities to as much accuracy allowed by a one-byte coding
1 | read.impute(file, rownames = NULL, nsnp = NULL, snpcol = 2)
|
file |
The input file name. This file my be gzipped. |
rownames |
The row names for the output object. Note that these correspond to
groups of three columns in the input file. If not supplied, names
are generated as |
nsnp |
The number of SNPs to be read in. This corresponds with the number of lines in the input file. If not supplied, the function does a preliminary pass to determine the number of lines |
snpcol |
Which column of the input will be used as the SNP name. Default is column 2 |
No provision is made for data for the X chromosome. Such data must be
first read as a SnpMatrix
and subsequently coerced to an
XSnpMatrix
object
an object of class SnpMatrix
David Clayton dc208@cam.ac.uk
1 | ##---- No example available yet
|
Loading required package: survival
Loading required package: Matrix
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