Files in snpStats
SnpMatrix and XSnpMatrix classes and methods

DESCRIPTION
NAMESPACE
src/mla.c
src/covwin.h
src/structure.c
src/outdata.c
src/hash_index.h
src/Rmissing.h
src/in.c
src/mvphenotype.c
src/glm_test.c
src/ipf.h
src/misc.c
src/plink.c
src/imputation.c
src/ld.c
src/single_snp_tests.c
src/gsl_poly.h
src/fst.c
src/inftrees.h
src/tdt.c
src/Runcertain.c
src/Makevars.win
src/uncertain.c
src/inffixed.h
src/snp_summary.c
src/switch.c
src/snpmpy.c
src/hphase.h
src/invert.c
src/readped.c
src/glm_test.h
src/ipf.c
src/solve_cubic.c
src/crc32.h
src/inflate.h
src/hash_index.c
src/deflate.h
src/mla.h
src/covwin.c
src/subset.c
src/uncertain.h
src/testBig.c
src/hphase.c
src/invert.h
src/count_gt.c
src/read_uncertain.c
src/bind.c
src/glm_test_R.c
src/input.c
src/Makevars
src/inffast.h
src/imputation.h
src/force_hom.c
build/vignette.rds
build/partial.rdb
vignettes/Fst-vignette.Rnw
vignettes/differences.Rnw
vignettes/ld-vignette.Rnw
vignettes/data-input-vignette.Rnw
vignettes/imputation-vignette.Rnw
vignettes/tdt-vignette.Rnw
vignettes/index.html
vignettes/pca-vignette.Rnw
vignettes/snpStats-vignette.Rnw
inst/doc/data-input-vignette.pdf inst/doc/tdt-vignette.pdf inst/doc/imputation-vignette.pdf inst/doc/tdt-vignette.R
inst/doc/pca-vignette.Rnw
inst/doc/pca-vignette.R inst/doc/pca-vignette.pdf
inst/doc/data-input-vignette.Rnw
inst/doc/tdt-vignette.Rnw
inst/doc/imputation-vignette.Rnw
inst/doc/data-input-vignette.R inst/doc/imputation-vignette.R inst/doc/Fst-vignette.R inst/doc/ld-vignette.R
inst/doc/snpStats-vignette.Rnw
inst/doc/snpStats-vignette.R inst/doc/snpStats-vignette.pdf
inst/doc/ld-vignette.Rnw
inst/doc/differences.pdf
inst/doc/Fst-vignette.Rnw
inst/doc/differences.Rnw
inst/doc/Fst-vignette.pdf inst/doc/ld-vignette.pdf
inst/extdata/sample-long-alleles.gz
inst/extdata/sample.bim
inst/extdata/sample-long.gz
inst/extdata/sample.fam
inst/extdata/sample.bed
inst/extdata/mach1.out.mlprob.gz
inst/extdata/sample.info
inst/extdata/sample.ped.gz
man/imputation.maf.Rd man/read.beagle.Rd man/qq.chisq.Rd man/random.snps.Rd man/pool2.Rd man/snp.imputation.Rd man/Fst.Rd man/convert.snpMatrix.Rd man/mean2g.Rd man/read.mach.Rd man/snp.lhs.tests.Rd man/ibsCount.Rd man/ld.example.Rd man/ImputationRules-class.Rd man/plotUncertainty.Rd man/misinherits.Rd man/tdt.snp.Rd man/SingleSnpTests-class.Rd man/snpStats-package.Rd man/switch.alleles.Rd man/row.summary.Rd man/testdata.Rd man/for.exercise.Rd man/xxt.Rd man/snp.pre.multiply.Rd man/pp.Rd man/pool.Rd man/families.Rd man/write.plink.Rd man/single.snp.tests.Rd man/ld.Rd man/example-new.Rd man/snp.rhs.tests.Rd man/SnpMatrix-class.Rd man/read.long.Rd man/snp.cor.Rd man/test.allele.switch.Rd man/filter.rules.Rd man/write.snp.matrix.Rd man/GlmEstimates-class.Rd man/snp.rhs.estimates.Rd man/chi.squared.Rd man/glm.test.control.Rd man/impute.snps.Rd man/XSnpMatrix-class.Rd man/snp.lhs.estimates.Rd man/sm.compare.Rd man/GlmTests-class.Rd man/ibsDist.Rd man/read.pedfile.Rd man/read.impute.Rd man/mvtests.Rd man/sample.Rd man/read.plink.Rd man/read.snps.long.Rd R/structure.R R/outdata.R R/long.R R/misc.R R/contingency.table.R R/ss.R R/pedfile.R R/qq-chisq.R R/convert.R R/single.R R/xstuff.R R/indata.R R/ld.R R/glm-test.R R/compare.R R/tdt-single.R R/qc.R R/imputation.R R/plink.R R/mvtests.R
data/datalist
data/families.RData
data/testdata.RData
data/ld.example.RData
data/for.exercise.RData
snpStats documentation built on Nov. 17, 2017, 9:07 a.m.