specL: specL - Prepare Peptide Spectrum Matches for Use in Targeted Proteomics

provides a functions for generating spectra libraries that can be used for MRM SRM MS workflows in proteomics. The package provides a BiblioSpec reader, a function which can add the protein information using a FASTA formatted amino acid file, and an export method for using the created library in the Spectronaut software. The package is developed, tested and used at the Functional Genomics Center Zurich <http://www.fgcz.ethz.ch>.

Package details

AuthorChristian Panse [aut, cre] (<https://orcid.org/0000-0003-1975-3064>), Jonas Grossmann [aut] (<https://orcid.org/0000-0002-6899-9020>), Christian Trachsel [aut], Witold E. Wolski [ctb]
Bioconductor views MassSpectrometry Proteomics
MaintainerChristian Panse <cp@fgcz.ethz.ch>
LicenseGPL-3
Version1.24.0
URL http://bioconductor.org/packages/specL/
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("specL")

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specL documentation built on Nov. 8, 2020, 7:55 p.m.