iRTpeptides: iRT peptides - independent retention time peptides
In specL: specL - Prepare Peptide Spectrum Matches for Use in Targeted Proteomics
Description
Format
Author(s)
References
Examples
Description
iRTpeptides data are used for genSwathIonLib rt normalization
assuming.
iRTpeptides first appear in the protViz 0.1.45 package.
It has been removed in protViz 0.2.10 to avoid package dependencies.
Format
contains a table
Author(s)
Jonas Grossmann and Christian Panse 2013
References
Using iRT, a normalized retention time for more targeted measurement of peptides.
Escher C, Reiter L, MacLean B, Ossola R, Herzog F, Chilton J, MacCoss MJ, Rinner O.
Source
Proteomics. 2012 Apr;12(8):1111-21. doi: 10.1002/pmic.201100463.
Examples
1
2
3
plot(sort(iRTpeptides$rt))
plot(pim<-protViz::parentIonMass(as.character(iRTpeptides$peptide)) ~ iRTpeptides$rt)
specL documentation built on Nov. 8, 2020, 7:55 p.m.
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Description Format Author(s) References Examples
Description
iRTpeptides data are used for genSwathIonLib rt normalization
assuming.
iRTpeptides first appear in the protViz 0.1.45 package.
It has been removed in protViz 0.2.10 to avoid package dependencies.
Format
contains a table
Author(s)
Jonas Grossmann and Christian Panse 2013
References
Using iRT, a normalized retention time for more targeted measurement of peptides. Escher C, Reiter L, MacLean B, Ossola R, Herzog F, Chilton J, MacCoss MJ, Rinner O. Source Proteomics. 2012 Apr;12(8):1111-21. doi: 10.1002/pmic.201100463.
Examples
1 2 3 | plot(sort(iRTpeptides$rt))
plot(pim<-protViz::parentIonMass(as.character(iRTpeptides$peptide)) ~ iRTpeptides$rt)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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