API for specL
specL - Prepare Peptide Spectrum Matches for Use in Targeted Proteomics

Global functions
BiblioSpec Man page
MRM Man page
SWATH Man page
Skyline Man page
annotate.protein_id Man page Source code
annotateProteinIDGrep Source code
bibliospec Man page
cdsw Man page Source code
convert_blib2psm Source code
convert_blib2psmInternal Source code
defaultSwathFragmentIon Source code
genSwathIonLib Man page Source code
generate.consensus Man page
generate.consensus,specLSet-method Man page
generateDynamicSwathWindow Man page
generate_swath_ion_library Source code
getProteinPeptideTable Man page
getProteinPeptideTable,specLSet-method Man page
iRT Man page
iRTpeptides Man page
ionlibrary Man page Man page
ionlibrary,specLSet-method Man page Man page
irt Man page
mascot2psmSet Source code
merge.specLSet Man page
merge.specLSet,specLSet-method Man page
ms1.p2069 Man page
normalize_rt Source code
onAttach Source code
onChargeState Source code
peptideStd Man page
peptideStd.redundant Man page
plot Man page
plot,ANY-method Man page
plot,specL-method Man page
plot,specL-methods Man page
plot,specLSet-method Man page
plot,specLSet-methods Man page
plot-methods Man page
plot.psm Man page Source code
plot.psmSet Man page Source code
plot_ptm_ion Source code
read.bibliospec Man page Source code
retentiontimePlot Source code
retentiontimePlotFile Source code
rt.input Man page
rt.input,specLSet-method Man page
rt.normalized Man page
rt.normalized,specLSet-method Man page
show,ANY-method Man page
show,specL-method Man page
show,specLSet-method Man page
show-methods Man page
skyline Man page
specL Man page
specL-class Man page
specLSet-class Man page
summary,specLSet-method Man page
summary.psmSet Man page Source code
swath Man page
swath_plot_ Source code
swath_q1q3_conflicts Source code
write.spectronaut Man page
write.spectronaut,ANY-method Man page
write.spectronaut,specL-method Man page
write.spectronaut,specL-methods Man page
write.spectronaut,specLSet-method Man page
write.spectronaut,specLSet-methods Man page
specL documentation built on Nov. 17, 2017, 8:48 a.m.