concatenateAlignments: Concatenate a list of Alignments into One

Description Usage Arguments Details Value

View source: R/concatenateAlignments.R

Description

Concatenate a list of Alignments from multiple sequences into a single object

Usage

1
concatenateAlignments(readInfo, seqInfo)

Arguments

readInfo

a list returned by scanBam function, each element correspond to a sequence, containing the information of strand, starting position, cigar string, and eventually flag, qname

seqInfo

a data frame that contains some key information of the alignments

Details

This method take a list of alignments across one or more sequences as output by scanBam and concatenates them into a single set of alignments which may include multiple sequences

Value

the concatenated alignments of the input list


strandCheckR documentation built on Nov. 1, 2018, 2:26 a.m.