concatenateAlignments: Concatenate a list of Alignments into One
In strandCheckR: Calculate strandness information of a bam file
Description
Usage
Arguments
Details
Value
View source: R/concatenateAlignments.R
Description
Concatenate a list of Alignments from multiple sequences into a
single object
Usage
1
concatenateAlignments(readInfo, seqInfo)
Arguments
readInfo
a list returned by scanBam function, each element
correspond to a sequence, containing the information of strand, starting
position, cigar string, and eventually flag, qname
seqInfo
a data frame that contains some key information of the
alignments
Details
This method take a list of alignments across one or more sequences
as output by scanBam
and concatenates them into a single set of alignments which may include
multiple sequences
Value
the concatenated alignments of the input list
strandCheckR documentation built on Nov. 8, 2020, 7:02 p.m.
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Description Usage Arguments Details Value
View source: R/concatenateAlignments.R
Description
Concatenate a list of Alignments from multiple sequences into a single object
Usage
1 | concatenateAlignments(readInfo, seqInfo)
|
Arguments
readInfo |
a list returned by |
seqInfo |
a data frame that contains some key information of the alignments |
Details
This method take a list of alignments across one or more sequences
as output by scanBam
and concatenates them into a single set of alignments which may include
multiple sequences
Value
the concatenated alignments of the input list
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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