getWinFromGranges: Get the Sliding Windows from a GRanges object
In strandCheckR: Calculate strandness information of a bam file
Description
Usage
Arguments
Value
View source: R/getWinFromGranges.R
Description
Get the positive/negative windows that overlap a GRanges object
Usage
1
getWinFromGranges(x, seqInfo, winWidth = 1000, winStep = 100)
Arguments
x
a GRanges object
seqInfo
a data frame that contains some key information of
the alignments
winWidth
The width of each window
winStep
The step size for sliding the window
Value
A list of two logical vectors (for positive and negative strand)
defining which windows that overlap the given Granges objects
strandCheckR documentation built on Nov. 8, 2020, 7:02 p.m.
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Description Usage Arguments Value
View source: R/getWinFromGranges.R
Description
Get the positive/negative windows that overlap a GRanges object
Usage
1 | getWinFromGranges(x, seqInfo, winWidth = 1000, winStep = 100)
|
Arguments
x |
a GRanges object |
seqInfo |
a data frame that contains some key information of the alignments |
winWidth |
The width of each window |
winStep |
The step size for sliding the window |
Value
A list of two logical vectors (for positive and negative strand) defining which windows that overlap the given Granges objects
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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