Files in strandCheckR

Calculate strandness information of a bam file

README.md

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

R/checkPairedEnd.R R/concatenateAlignments.R R/getWinFromBamFile.R R/getWinFromIRanges.R R/getWinInSequence.R R/aaa.R R/keptProbaWin.R R/calculateStrandNbReads.R R/plotWin.R R/getWinFromReadInfo.R R/summarizeHist.R R/calculateStrandCoverage.R R/keptReadFragment.R R/getWinOfAlignments.R R/filterDNA.R R/plotHist.R R/intersectWithFeature.R R/getWinFromGranges.R R/sequenceInfoInPartition.R vignettes/strandCheckR.Rmd man/getWinFromIRanges.Rd man/plotWin.Rd man/summarizeHist.Rd man/calculateStrandCoverage.Rd man/keptReadFragment.Rd man/getWinFromBamFile.Rd man/intersectWithFeature.Rd man/getWinFromGranges.Rd man/getWinOfAlignments.Rd man/keptProbaWin.Rd man/concatenateAlignments.Rd man/getWinFromReadInfo.Rd man/checkPairedEnd.Rd man/plotHist.Rd man/strandCheckR-package.Rd man/filterDNA.Rd man/calculateStrandNbReads.Rd tests/testthat.R tests/testthat/test_keptProbaWin.R tests/testthat/test_concatenateAlignments.R tests/testthat/test_keptReadFragment.R tests/testthat/test_plotWin.R tests/testthat/test_getWinFromIRanges.R tests/testthat/test_checkPairedEnd.R tests/testthat/test_getWinFromReadInfo.R tests/testthat/test_getWinFromBamFile.R tests/testthat/test_getWinInSequence.R tests/testthat/test_calculateStrandCoverage.R tests/testthat/test_calculateStrandNbReads.R tests/testthat/test_plotHist.R tests/testthat/test_filterDNA.R tests/testthat/test_getWinOfAlignments.R tests/testthat/test_sequenceInfoInPartition.R tests/testthat/test_summarizeHist.R

inst/doc/strandCheckR.html

inst/doc/strandCheckR.Rmd inst/doc/strandCheckR.R

inst/extdata/s1.sorted.bam.bai

inst/extdata/paired.bam

inst/extdata/s1.sorted.bam

inst/extdata/s2.sorted.bam

inst/extdata/s2.sorted.bam.bai

inst/extdata/paired.bam.bai

strandCheckR documentation built on Nov. 8, 2020, 7:02 p.m.