Utilities to train and validate classifiers based on pair switching using the K-Top-Scoring-Pair (KTSP) algorithm

KTSP.Classify | Function to classify samples using a KTSP classifier. |

KTSP.Train | Funtion for training the K-TSP classifier. |

matTesting | Gene expression matrix for test set data |

matTraining | Gene expression matrix for training set data |

SWAP.Calculate.BasicTSPScores | Function to calculate basic TSP scores. |

SWAP.CalculateScores | Function to calculate the pair-wise scores with any given... |

SWAP.CalculateSignedScore | Function to calculate the pair-wise scores. |

SWAP.Calculate.SignedTSPScores | Function to calculate signed TSP scores. |

SWAP.Filter.Wilcoxon | Statistical feature filtering based on Wilcoxon test on the... |

SWAP.GetKTSP.PredictionStats | Function for computing various performance measures related... |

SWAP.GetKTSP.Result | Function for prediction followed by computing various... |

SWAP.GetKTSP.TrainTestResults | Trains a kTSP on given training data and provides performance... |

SWAP.Kby.Measurement | K selection for a kTSP classifier. |

SWAP.Kby.Ttest | K selection for a kTSP classifier. |

SWAP.KTSP.Classify | Function to classify samples using a KTSP classifier. |

SWAP.KTSP.CV | Performs k-fold cross validation. |

SWAP.KTSP.LOO | Performs leave one out cross validation. |

SWAP.KTSP.Statistic | Function computing TSP votes (comparisons) and combine their... |

SWAP.KTSP.Train | Deprecated function for training the K-TSP classifier. |

SWAP.MakeTSPTable | Make a table of TSPs in order of TSP score. |

SWAP.PlotKTSP.GenePairBoxplot | Plots a feature pair as boxplots. |

SWAP.PlotKTSP.GenePairClassesBoxplot | Plots a feature pair as seperated by class as boxplots. |

SWAP.PlotKTSP.GenePairScatter | Make a scatter plot of two features. |

SWAP.PlotKTSP.Genes | Plot features seperated by phenotype |

SWAP.PlotKTSP.TrainTestROC | Plots an ROC curve for training and testing results. |

SWAP.PlotKTSP.Votes | Plots a heatmap of k-TSP votes. |

SWAP.Train.1TSP | Function for training the 1-TSP classifier. |

SWAP.Train.KTSP | Function for training the K-TSP classifier. |

switchBox-package | A package to train and apply K-Top-Scoring-Pair (KTSP)... |

testingGroup | Testing set phenotypes |

trainingGroup | Training set phenotypes |

Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.