SWAP.MakeTSPTable: Make a table of TSPs in order of TSP score.

Description Usage Arguments Value Author(s) References See Also Examples

View source: R/exportedFuncs.R

Description

Given the output from SWAP.CalculateScores and a number maxk, makes a table of the top maxk pairs. The output of this function can be provided to a k-selection function such as SWAP.Kby.Ttest or SWAP.Kby.Measurement to test out different k-selection methods.

Usage

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SWAP.MakeTSPTable(Scores, maxk, disjoint = TRUE)

Arguments

Scores

is the output of a scoring function such as SWAP.CalculateScores containing a vector of TSP scores.

maxk

is an integer: the number of pairs to select.

disjoint

a logical indicating whether only disjoint pairs should be selected or not.

Value

A data frame of maxk pairs, their score and tieVote.

Author(s)

Bahman Afsari [email protected], Luigi Marchionni [email protected], Wikum Dinalankara [email protected]

References

See switchBox for the references.

See Also

SWAP.Kby.Ttest, SWAP.Kby.Measurement

Examples

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### load gene expression data
data(trainingData)

### calculate scores
scores = SWAP.CalculateScores(matTraining, trainingGroup, featureNo=5)

### make top 5 pair table
SWAP.MakeTSPTable(scores, 5, FALSE)

switchBox documentation built on Nov. 1, 2018, 2:46 a.m.