plotTimeseries: Plot ExpressionTimeSeries data
In tigre: Transcription factor Inference through Gaussian process Reconstruction of Expression
Description
Usage
Arguments
Details
Author(s)
See Also
Examples
Description
Plots ExpressionTimeSeries data.
Usage
1
plotTimeseries(data, nameMapping = NULL)
Arguments
data
An ExpressionTimeSeries object.
nameMapping
The annotation used for mapping the names of the
genes for the figures. By default, the SYMBOL annotation for the
array is used, if available.
Details
The function plots the expression levels from an ExpressionTimeSeries
object and the associated standard deviations. If the object
includes multiple time series, they will be plotted in the same
figure, but slightly shifted.
Author(s)
Antti Honkela
See Also
Examples
1
2
3
4
5
6
# Load a mmgmos preprocessed fragment of the Drosophila developmental
# time series
data(drosophila_gpsim_fragment)
# Plot the first two genes
plotTimeseries(drosophila_gpsim_fragment[1:2,])
tigre documentation built on Nov. 8, 2020, 5:32 p.m.
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Description Usage Arguments Details Author(s) See Also Examples
Description
Plots ExpressionTimeSeries data.
Usage
1 | plotTimeseries(data, nameMapping = NULL)
|
Arguments
data |
An ExpressionTimeSeries object. |
nameMapping |
The annotation used for mapping the names of the genes for the figures. By default, the SYMBOL annotation for the array is used, if available. |
Details
The function plots the expression levels from an ExpressionTimeSeries object and the associated standard deviations. If the object includes multiple time series, they will be plotted in the same figure, but slightly shifted.
Author(s)
Antti Honkela
See Also
Examples
1 2 3 4 5 6 | # Load a mmgmos preprocessed fragment of the Drosophila developmental
# time series
data(drosophila_gpsim_fragment)
# Plot the first two genes
plotTimeseries(drosophila_gpsim_fragment[1:2,])
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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