R/data.R

In tomoda: Tomo-seq data analysis

#' A raw read count matrix of zebrafish injured heart.
#' 
#' A dataset containing gene expression across 40 sections of \strong{z}ebrafish \strong{h}eart generated with Tomo-seq. 
#' The zebrafish heart is 3 days post cryoinjury (3 dpi).
#' 
#' @usage data(zh.data)
#' 
#' @format A numeric matrix with 16495 genes as rows and 40 section as columns. Its row names are gene names and column names are section names.
#' 
#' @references Wu CC, Kruse F, Vasudevarao MD, et al. Spatially Resolved Genome-wide Transcriptional Profiling Identifies BMP Signaling as Essential Regulator of Zebrafish Cardiomyocyte Regeneration. \emph{Dev Cell}. 2016;36(1):36-49. doi:10.1016/j.devcel.2015.12.010
#' 
#' @source \url{https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE74652}
"zh.data"