Man pages for transcriptR
An Integrative Tool for ChIP- And RNA-Seq Based Primary Transcripts Detection and Quantification

addFeature-methodsaddFeature
annotReference annotation (knownGene from UCSC)
annotateTranscripts-methodsannotateTranscripts
breakTranscriptsByPeaks-methodsbreakTranscriptsByPeaks
cdsExample of 'ChipDataSet' object.
ChipDataSet-classChipDataSet
constructCDSconstructCDS
constructTDSconstructTDS
detectTranscripts-methodsdetectTranscripts
estimateBackground-methodsestimateBackground
estimateGapDistance-methodsestimateGapDistance
exportCoverage-methodsexportCoverage
getConfusionMatrix-methodsgetConfusionMatrix
getGenomicAnnot-methodsgetGenomicAnnot
getPeaks-methodsgetPeaks
getPredictorSignificance-methodsgetPredictorSignificance
getProbTreshold-methodsgetProbTreshold
getQuadProb-methodsgetQuadProb
getTestedGapDistances-methodsgetTestedGapDistances
getTranscripts-methodsgetTranscripts
peaksToBed-methodspeaksToBed
plotErrorRate-methodsplotErrorRate
plotFeatures-methodsplotFeatures
plotGenomicAnnot-methodsplotGenomicAnnot
plotROC-methodsplotROC
predictStrand-methodspredictStrand
predictTssOverlap-methodspredictTssOverlap
showShow method for ChipDataSet and TranscriptionDataSet objects
tdsExample of 'TranscriptionDataSet' object.
TranscriptionDataSet-classTranscriptionDataSet
transcriptsToBed-methodstranscriptsToBed
transcriptR documentation built on Nov. 17, 2017, 10:17 a.m.