Files in transcriptR
An Integrative Tool for ChIP- And RNA-Seq Based Primary Transcripts Detection and Quantification

NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
tests/testthat.R tests/testthat/test-ChipDataSet-methods.R tests/testthat/test-TranscriptionDataSet-methods.R tests/testthat/test-objects.R man/peaksToBed-methods.Rd man/breakTranscriptsByPeaks-methods.Rd man/getTestedGapDistances-methods.Rd man/addFeature-methods.Rd man/constructCDS.Rd man/plotFeatures-methods.Rd man/detectTranscripts-methods.Rd man/transcriptsToBed-methods.Rd man/plotROC-methods.Rd man/tds.Rd man/estimateBackground-methods.Rd man/getQuadProb-methods.Rd man/getTranscripts-methods.Rd man/getPredictorSignificance-methods.Rd man/predictStrand-methods.Rd man/annotateTranscripts-methods.Rd man/plotErrorRate-methods.Rd man/predictTssOverlap-methods.Rd man/annot.Rd man/estimateGapDistance-methods.Rd man/getGenomicAnnot-methods.Rd man/plotGenomicAnnot-methods.Rd man/getProbTreshold-methods.Rd man/cds.Rd man/getConfusionMatrix-methods.Rd man/exportCoverage-methods.Rd man/show.Rd man/TranscriptionDataSet-class.Rd man/ChipDataSet-class.Rd man/getPeaks-methods.Rd man/constructTDS.Rd
data/annot.rda
data/datalist
data/cds.rda
data/tds.rda
R/TranscriptionDataSet-class.R R/show.R R/ChipDataSet-generics.R R/TranscriptionDataSet-generics.R R/utils.R R/ChipDataSet-methods.R R/TranscriptionDataSet-methods.R R/ChipDataSet-class.R
inst/extdata/chip_reads.bam.bai
inst/extdata/rna_reads.bam
inst/extdata/rna_reads.bam.bai
inst/extdata/peaks.txt
inst/extdata/chip_reads.bam
inst/doc/transcriptR.Rmd inst/doc/transcriptR.R inst/doc/transcriptR.pdf vignettes/transcriptR.Rmd
vignettes/transcriptR.bib
vignettes/images/Peak_strandedness_prediction.png
vignettes/images/Average_RNAseq_signal_across_peak_region.png
vignettes/images/Main_scheme.png
vignettes/images/Gene_associated_peak_prediction.png
transcriptR documentation built on Nov. 17, 2017, 10:17 a.m.