Man pages for trio
Testing of SNPs and SNP Interactions in Case-Parent Trio Studies
| allelicTDT | Allelic TDT |
| colEMlrt | EM Likelihood Ratio Test |
| colGxE | Genotypic TDT for Gene-Environment Interactions |
| colGxGPerms | Permutation-Based gTDT for Two-Way Interactions |
| colPOlrt | Parent-of-Origin Tests |
| colTDTmaxTest | Maximum Genotypic TDT |
| colTDTsam | SAM and EBAM for Trio Data |
| findLDblocks | Identifying LD blocks |
| getLD | Computation of LD Measures |
| getMatPseudo | Generates Case-Pseudo-Control Matrix |
| lrControl | Control Parameters for Trio Logic Regression |
| ped2geno | Transformation of Ped-File |
| plot.getLD | Plotting a getLD or getLDlarge Object |
| plot.LDblocks | Plotting a LDblock Object |
| plot.trioLR | Plotting for trioLR Objects |
| poly4root | Roots of a Fourth Degree Polynomial |
| print.colGxE | Printing and Storing of colGxE objects |
| print.trioFS | Printing and plotting of a trioFS object |
| print.trioLR | Printing of trioLR Objects |
| probTDT | TDT on genotype probabilities matrix |
| read.pedfile | Reading a Ped File |
| removeSNPs | Remove SNPs or Trios |
| scoreTDT | Score Tests for SNPs, GxE, and GxG Interactions |
| tdt | Genotypic TDT |
| tdtGxG | Genotypic TDT for Two-Way Interactions |
| trio.check | Check Case-Parent Trio Data for Mendelian Errors |
| trio.data | Case-Parent Trio Data |
| trioFS | Trio Feature Selection |
| trioLR | Trio Logic Regression |
| trio.permTest | Permutation Tests for Trio Logic Regression |
| trio.power | Power and sample size calculation |
| trio.prepare | Generate Trio Data Format Suitable for Trio Logic Regression |
| trio.sim | Simulate Case-Parent Trios |
| vcf2geno | Transformation of VFC File |
