unifiedWMWqPCR: Unified Wilcoxon-Mann Whitney Test for testing differential expression in qPCR data
Version 1.12.0

This packages implements the unified Wilcoxon-Mann-Whitney Test for qPCR data. This modified test allows for testing differential expression in qPCR data.

Browse man pages Browse package API and functions Browse package files

AuthorJan R. De Neve & Joris Meys
Bioconductor views DifferentialExpression GeneExpression MicrotitrePlateAssay MultipleComparison QualityControl Software Visualization qPCR
Date of publicationNone
MaintainerJoris Meys <Joris.Meys@UGent.be>
LicenseGPL (>=2)
Version1.12.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("unifiedWMWqPCR")

Man pages

as.matrix.uwmwEstimate: S3 method as.matrix for uwmwEstimate objects.
as.matrix.uwmwRes: S3 method as.matrix for uwmwRes objects.
forestplot-methods: Making a forest plot of the results of uWMW
getEstimate-methods: Extract logor, or, odds and percentages from a uwmwRes object
NBdata: Documentation for the dataset NBdata
plot: Quick forest plot of significantly up- and downregulated...
sort.uwmwRes: Sort and order method for uWMWRes objects
unifiedWMWqPCR-package: Unified Wilcoxon-Mann Whitney Test for qPCR data.
uwmw_Accessors: Extract info from uwmwRes and uwmwEstimate objects
uwmwEstimate-class: The class uwmwEstimate
uwmw_Extract: Extract data from uwmwRes and uwmwEstimate objects.
uWMW-methods: The unified Wilcoxon-Mann-Whitney test for qPCR data
uwmwRes-class: Class uwmwRes
volcanopar: Parameters used for the function volcanoplot
volcanoplot-methods: Make a volcano plot of the outcome of a uWMW test

Functions

Extract Man page
NBdata Man page
NBgroups Man page
NBmat Man page
[,uwmwEstimate,ANY-method Man page
[,uwmwEstimate,character-method Man page
[,uwmwRes,ANY-method Man page
as.matrix,uwmwEstimate-method Man page
as.matrix,uwmwRes-method Man page
as.matrix.uwmwEstimate Man page Source code
as.matrix.uwmwRes Man page Source code
coef Man page
coef,uwmwRes-method Man page
esttype Man page
esttype,uwmwEstimate-method Man page
forestplot Man page
forestplot,ANY-method Man page
forestplot,uwmwEstimate-method Man page
forestplot,uwmwRes-method Man page
forestplot.internal Man page Source code
getEstimate Man page
getOrder Man page
getOrder,uwmwRes-method Man page
groupinfo Man page
groupinfo,uwmwEstimate-method Man page
groupinfo,uwmwRes-method Man page
groups.message Source code
housekeeping Man page
housekeeping,uwmwEstimate-method Man page
housekeeping,uwmwRes-method Man page
is.unsorted Man page
is.unsorted,uwmwRes-method Man page
length,uwmwEstimate-method Man page
length,uwmwRes-method Man page
logor Man page
logor,uwmwRes-method Man page
names,uwmwEstimate-method Man page
names,uwmwRes-method Man page
oddsRatio Man page
oddsRatio,uwmwRes-method Man page
order,uwmwRes-method Man page
orderedBy Man page
orderedBy,uwmwEstimate-method Man page
orderedBy,uwmwRes-method Man page
outer.h.f Source code
outer.o.f Source code
plot,uwmwRes,ANY-method Man page
plot.uwmwRes Source code
prep.df Source code
pval Man page
pval,uwmwRes-method Man page
ref Man page
ref,uwmwEstimate-method Man page
sandwich1.f Source code
sandwich2.f Source code
sandwich3.f Source code
se Man page
se,uwmwEstimate-method Man page
se,uwmwRes-method Man page
sort.uwmwRes Man page
type Man page
type,uwmwEstimate-method Man page
uWMW Man page Source code
uWMW,data.frame-method Man page
uWMW,matrix-method Man page
uWMW,qPCRset-method Man page
uWMW.H Source code
uWMW.O Source code
uWMWqPCR Man page
unifiedWMWqPCR Man page
unifiedWMWqPCR-package Man page
unorder Man page
unorder,ANY-method Man page
unorder,uwmwRes-method Man page
uwmwEstimate Man page Source code
uwmwEstimate-class Man page
uwmwRes Man page Source code
uwmwRes-class Man page
uwmw_Accessors Man page
uwmw_Extract Man page
vcov Man page
vcov,uwmwRes-method Man page
volcano Source code
volcano-par Man page
volcanopar Man page
volcanoplot Man page
volcanoplot,MArrayLM-method Man page
volcanoplot,matrix-method Man page
volcanoplot,numeric-method Man page
volcanoplot,uwmwRes-method Man page
volcanoplot-par Man page
volcanoplotpar Man page
wmw.f Source code
zval Man page
zval,uwmwRes-method Man page

Files

DESCRIPTION
NAMESPACE
R
R/Datasets.R
R/S3Generics.R
R/allGenerics.R
R/as.matrix.uwmwEstimate.R
R/as.matrix.uwmwRes.R
R/forestplot_methods.R
R/getEstimate_methods.R
R/groups.message.R
R/outer.h.f.R
R/outer.o.f.R
R/plotMethoduwmwRes.R
R/prepdf.R
R/sandwich1.f.R
R/sandwich2.f.R
R/sandwich3.f.R
R/sort.uwmwRes.R
R/uWMW.H.R
R/uWMW.O.R
R/uWMW_Extract.R
R/uWMW_internal.R
R/uWMW_methods.R
R/unifiedWMWqPCR-package.R
R/uwmwEstimate_Class.R
R/uwmwRes_Class.R
R/uwmw_Accessors.R
R/uwmw_Showmethods.R
R/volcano-internal.R
R/volcanoplot.R
R/wmw.f.R
build
build/vignette.rds
data
data/NBdata.rda
data/NBmat.rda
inst
inst/CITATION
inst/NEWS
inst/doc
inst/doc/unifiedWMWqPCR.R
inst/doc/unifiedWMWqPCR.Rnw
inst/doc/unifiedWMWqPCR.pdf
man
man/NBdata.Rd
man/as.matrix.uwmwEstimate.Rd
man/as.matrix.uwmwRes.Rd
man/forestplot-methods.Rd
man/getEstimate-methods.Rd
man/plot.Rd
man/sort.uwmwRes.Rd
man/uWMW-methods.Rd
man/unifiedWMWqPCR-package.Rd
man/uwmwEstimate-class.Rd
man/uwmwRes-class.Rd
man/uwmw_Accessors.Rd
man/uwmw_Extract.Rd
man/volcanopar.Rd
man/volcanoplot-methods.Rd
vignettes
vignettes/unifiedWMWqPCR.Rnw
unifiedWMWqPCR documentation built on May 20, 2017, 10:15 p.m.