unifiedWMWqPCR: Unified Wilcoxon-Mann Whitney Test for testing differential expression in qPCR data

This packages implements the unified Wilcoxon-Mann-Whitney Test for qPCR data. This modified test allows for testing differential expression in qPCR data.

Author
Jan R. De Neve & Joris Meys
Date of publication
None
Maintainer
Joris Meys <Joris.Meys@UGent.be>
License
GPL (>=2)
Version
1.10.0

View on Bioconductor

Man pages

as.matrix.uwmwEstimate
S3 method as.matrix for uwmwEstimate objects.
as.matrix.uwmwRes
S3 method as.matrix for uwmwRes objects.
forestplot-methods
Making a forest plot of the results of uWMW
getEstimate-methods
Extract logor, or, odds and percentages from a uwmwRes object
NBdata
Documentation for the dataset NBdata
plot
Quick forest plot of significantly up- and downregulated...
sort.uwmwRes
Sort and order method for uWMWRes objects
unifiedWMWqPCR-package
Unified Wilcoxon-Mann Whitney Test for qPCR data.
uwmw_Accessors
Extract info from uwmwRes and uwmwEstimate objects
uwmwEstimate-class
The class uwmwEstimate
uwmw_Extract
Extract data from uwmwRes and uwmwEstimate objects.
uWMW-methods
The unified Wilcoxon-Mann-Whitney test for qPCR data
uwmwRes-class
Class uwmwRes
volcanopar
Parameters used for the function volcanoplot
volcanoplot-methods
Make a volcano plot of the outcome of a uWMW test

Files in this package

unifiedWMWqPCR/DESCRIPTION
unifiedWMWqPCR/NAMESPACE
unifiedWMWqPCR/R
unifiedWMWqPCR/R/Datasets.R
unifiedWMWqPCR/R/S3Generics.R
unifiedWMWqPCR/R/allGenerics.R
unifiedWMWqPCR/R/as.matrix.uwmwEstimate.R
unifiedWMWqPCR/R/as.matrix.uwmwRes.R
unifiedWMWqPCR/R/forestplot_methods.R
unifiedWMWqPCR/R/getEstimate_methods.R
unifiedWMWqPCR/R/groups.message.R
unifiedWMWqPCR/R/outer.h.f.R
unifiedWMWqPCR/R/outer.o.f.R
unifiedWMWqPCR/R/plotMethoduwmwRes.R
unifiedWMWqPCR/R/prepdf.R
unifiedWMWqPCR/R/sandwich1.f.R
unifiedWMWqPCR/R/sandwich2.f.R
unifiedWMWqPCR/R/sandwich3.f.R
unifiedWMWqPCR/R/sort.uwmwRes.R
unifiedWMWqPCR/R/uWMW.H.R
unifiedWMWqPCR/R/uWMW.O.R
unifiedWMWqPCR/R/uWMW_Extract.R
unifiedWMWqPCR/R/uWMW_internal.R
unifiedWMWqPCR/R/uWMW_methods.R
unifiedWMWqPCR/R/unifiedWMWqPCR-package.R
unifiedWMWqPCR/R/uwmwEstimate_Class.R
unifiedWMWqPCR/R/uwmwRes_Class.R
unifiedWMWqPCR/R/uwmw_Accessors.R
unifiedWMWqPCR/R/uwmw_Showmethods.R
unifiedWMWqPCR/R/volcano-internal.R
unifiedWMWqPCR/R/volcanoplot.R
unifiedWMWqPCR/R/wmw.f.R
unifiedWMWqPCR/build
unifiedWMWqPCR/build/vignette.rds
unifiedWMWqPCR/data
unifiedWMWqPCR/data/NBdata.rda
unifiedWMWqPCR/data/NBmat.rda
unifiedWMWqPCR/inst
unifiedWMWqPCR/inst/CITATION
unifiedWMWqPCR/inst/NEWS
unifiedWMWqPCR/inst/doc
unifiedWMWqPCR/inst/doc/unifiedWMWqPCR.R
unifiedWMWqPCR/inst/doc/unifiedWMWqPCR.Rnw
unifiedWMWqPCR/inst/doc/unifiedWMWqPCR.pdf
unifiedWMWqPCR/man
unifiedWMWqPCR/man/NBdata.Rd
unifiedWMWqPCR/man/as.matrix.uwmwEstimate.Rd
unifiedWMWqPCR/man/as.matrix.uwmwRes.Rd
unifiedWMWqPCR/man/forestplot-methods.Rd
unifiedWMWqPCR/man/getEstimate-methods.Rd
unifiedWMWqPCR/man/plot.Rd
unifiedWMWqPCR/man/sort.uwmwRes.Rd
unifiedWMWqPCR/man/uWMW-methods.Rd
unifiedWMWqPCR/man/unifiedWMWqPCR-package.Rd
unifiedWMWqPCR/man/uwmwEstimate-class.Rd
unifiedWMWqPCR/man/uwmwRes-class.Rd
unifiedWMWqPCR/man/uwmw_Accessors.Rd
unifiedWMWqPCR/man/uwmw_Extract.Rd
unifiedWMWqPCR/man/volcanopar.Rd
unifiedWMWqPCR/man/volcanoplot-methods.Rd
unifiedWMWqPCR/vignettes
unifiedWMWqPCR/vignettes/unifiedWMWqPCR.Rnw