as.matrix.uwmwEstimate: S3 method as.matrix for uwmwEstimate objects.

In unifiedWMWqPCR: Unified Wilcoxon-Mann Whitney Test for testing differential expression in qPCR data

Description

For uwmwEstimate objects, an as.matrix method is defined that transforms the object to a numeric matrix with the following columns:

est:

The estimates

se:

The standard errors on estimates.

ll

lower limit of the confidence interval

ul

upper limit of the confidence interval

The row names are the names of the tested genes/features. The matrix takes the ordering in the object into account if necessary.

Usage

## S3 method for class 'uwmwEstimate'
as.matrix(x, ...)

## S4 method for signature 'uwmwEstimate'
as.matrix(x, ...)

Arguments

x	a uwmwEstimate object
...	currently ignored

Value

A matrix with the columns specified above.

Author(s)

Joris Meys

Examples

data(NBmat)
NBtest <- uWMW(NBmat, groups=NBgroups)
NBest <- getEstimate(NBtest,"p")
as.matrix(NBtest)

unifiedWMWqPCR documentation built on Nov. 8, 2020, 6:05 p.m.