pwea3NULLgroups: Regulon-specific NULL model

In viper: Virtual Inference of Protein-activity by Enriched Regulon analysis

Description

This function generates the regulon-specific NULL models

Usage

pwea3NULLgroups(pwnull, groups, cores = 1, verbose = TRUE)

Arguments

pwnull	Numerical matrix representing the null model, with genes as rows (geneID as rownames) and permutations as columns
groups	List containing the regulons
cores	Integer indicating the number of cores to use (only 1 in Windows-based systems)
verbose	Logical, whether progression messages should be printed in the terminal

Value

A list containing two elements:

groups

Regulon-specific NULL model containing the enrichment scores

ss

Direction of the regulon-specific NULL model

viper documentation built on Nov. 8, 2020, 7:37 p.m.